Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3994g00006 ATGGCGGGTTTATTCTCACTAGGCGGTGGAGATAGAGGTAGAGGTAGAGGAACCAACCAACAACAACAAGAAGAAGCACAAGGGCATCATAACCCAACCACGGAATTCCCTCCGCCCGAGACCCTATACTGGTACAAGAACGAGGATGTGTCGTCGTACAGAGGGTTGGAGCTATGGAACCAGCAACAGGAGCAGTTCATGCCGGGAACAAGGCCATCGGAACAAGATGTGTACGGGGCGAGCAGGAGCTACGATGATCCGCCGTCCTCGTCGAGATCCTCAGGGATGATGACGACTATGAGAGGTCGAGGAGGAATAAGCTGCCAAGATTGCGGGAACAAAGCCAAGAAGGATTGCCCCCACATGAGGTGCAGGACTTGCTGTAAAAGCAGAGGCTTCCATTGCCAAACACACATCAAAAGCACTTGGGTTCCTGCTCCTAAGCGTCGCGAGCGCCAACAGCAACACCAACTCCAACTTCACCCGGACACTCTTCCCAGAAGACACCGCGAAACAGAGCACCGGGATTTTCCTGCAGTGGTAAGCTCGCCTGCGGATTTCCGATGTGTGCGGGTGAACTCCATTGACGATGCGGACGAACAATTTGCATACCAAACGGCAGTGAACATAGGAGGGCATGTGTTCAAAGGAATTCTGTACGACCAGGGTCCTGAATATAACTACACAGCTGGAGATGTGAGCGCCCCCGCTGGCGTAGGTGGAGTTCAACCATTGAACCTCATTGCCGGTGCCGCCAGCGGTGCGTCTGTTTTACCCGCGAGCTCAATGGGTGGTGGTGCCATGGTTCCGCCGGGTGGGGCGCTTGGGGATCCTTCTTCTTTGTATCCAGCTCCACTTAACACCATCATGGCTGAAGGTATTGGTACGCAATTCTTCCCTCGAGATCTTCATAAATAG 918 0.5359 MAGLFSLGGGDRGRGRGTNQQQQEEAQGHHNPTTEFPPPETLYWYKNEDVSSYRGLELWNQQQEQFMPGTRPSEQDVYGASRSYDDPPSSSRSSGMMTTMRGRGGISCQDCGNKAKKDCPHMRCRTCCKSRGFHCQTHIKSTWVPAPKRRERQQQHQLQLHPDTLPRRHRETEHRDFPAVVSSPADFRCVRVNSIDDADEQFAYQTAVNIGGHVFKGILYDQGPEYNYTAGDVSAPAGVGGVQPLNLIAGAASGASVLPASSMGGGAMVPPGGALGDPSSLYPAPLNTIMAEGIGTQFFPRDLHK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3994g00006 305 NCBIfam putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Pral3994g00006 305 MobiDBLite consensus disorder prediction 1 42 - -
Pral3994g00006 305 NCBIfam LRP1 C-terminal domain 177 224 IPR006511 -
Pral3994g00006 305 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 287 IPR007818 GO:0003700|GO:0006355
Pral3994g00006 305 MobiDBLite consensus disorder prediction 15 30 - -
Pral3994g00006 305 MobiDBLite consensus disorder prediction 66 97 - -
Pral3994g00006 305 Pfam Domain of unknown function (DUF702) 105 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3994g00006 Pral-Chr3994 54139 56066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3994g00006 1 300 C2H2 Transcription Factor Family AT3G51060 41.489 7.20e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral3994g00006 DUF702 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3994g00006 - - pcin:129311615 422.935