Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3987g00020 ATGGGTATTGATTTTTCAAAGATCTCATCATGCTGTTGTTACCATGAGAGTGGTCTCAATAACTGGTTGTTTTGGATTTCCTATTTAGAAAATGAAAAGAAAAGTGACGCCCCTAATGTGCCATCATTTCAAGAGTACAAAATTCATCAGCTCAGCAAGGCTACTTCTGGATTTGCTACCGAAAATATAGTTTCCGAACAGGGGGAAAATGCTCCAAATATGGTTTATAGAGGAAAACTGGAGAATCAAACACTAATTGCTGTTAAACGGTTCAATAGACAAGCTTGGCCTGATGCCAAACAATTTACACAAGAAGCCAAGGCAATTAGTCGTCTAAGAAATGAAAGGTTGGTGAGCCTACTTGGATGCTGTGGTGATGGTGAAGAGAGGTTACTTGTTGCTGAATATATGCCCAATGATACTTTGGCCACACACTTGTTCCATTGGGAAACTGAGCCCATGAAATGGACAATGCGACTGAGGGTTGCTCTATATGTTGCCCAAGCCCTAGAATATTGTGCAAGCAAAGGACGTACGCTATATCATGATTTAAATGCTTATAGAGTCCTTTTTGATGATGAAGGAAATCCCAGAATCTCATGCTTTGGTTTGATGAAGAACAGTCGAGATGGTAAAAGTTATAGTTCAAACTTGGCATTTGCTCCACCTGAATATCTCAGGATAGGTAGAATTACTCCAGCAAGTGTCACATACAGTTTTGGAACCATTTTGCTGGACCTTCTCACTGGAAAGCATATTCCTCCTGGCCTTGCACTTGACCTGATTCGGGAGAGGAACCTTGATATGTTGAAAGATTCTTGTTTAGAAGGAGAGTTTTCAAGTGATGAAGGGATTGAATTTGTGCAGTTAGCAGCAGAATGTTTGCGAACAGAACCACAGGAGCGTCCTCATCCCAATTCATTGGTTACTGCTTTGATACCTATACAGAAGGATTCTGAGGTTCCTTCTTATGTTTTGATGGGTTTACCGCATGATGCTACCACTTCATCCCTTCCATCAATTGCTGAAGCTTGTCTGAGATTGGATTTGACAGCCTTCCATGCCTTCCTTGAGAATATGGGGTATAAAGATGATGAGGCTACTTCTACTGAGGTGTCATTGATATGGACCTACCAGATGTATGAAACATTGTACCCAAAAAAGAAGGGTGATGCTACTTTTCGCCATAAAGATTTTAGCACCGCGATTGATAGCTATACACAGTTCATTGATGCTGGAACCATGGTTTCTCCGACAGTTTATGCACGTCGCGGCCTGTGTTATCTGAAGAACAAAATGCCAGAGAAAGCACTGAACGATGCATTGCAAGCAATTAAAACTTCCCCTACTTGCTACATTGCATTTTACTTACAAGCTATGGCACTTGTTGCATTGGGCAAGGAGAATGAGGCTCAGGTGGCTCTTAAACAGGCTTCTTCACTTGAAAGTAAAACGTACATAAATTAG 1467 0.4117 MGIDFSKISSCCCYHESGLNNWLFWISYLENEKKSDAPNVPSFQEYKIHQLSKATSGFATENIVSEQGENAPNMVYRGKLENQTLIAVKRFNRQAWPDAKQFTQEAKAISRLRNERLVSLLGCCGDGEERLLVAEYMPNDTLATHLFHWETEPMKWTMRLRVALYVAQALEYCASKGRTLYHDLNAYRVLFDDEGNPRISCFGLMKNSRDGKSYSSNLAFAPPEYLRIGRITPASVTYSFGTILLDLLTGKHIPPGLALDLIRERNLDMLKDSCLEGEFSSDEGIEFVQLAAECLRTEPQERPHPNSLVTALIPIQKDSEVPSYVLMGLPHDATTSSLPSIAEACLRLDLTAFHAFLENMGYKDDEATSTEVSLIWTYQMYETLYPKKKGDATFRHKDFSTAIDSYTQFIDAGTMVSPTVYARRGLCYLKNKMPEKALNDALQAIKTSPTCYIAFYLQAMALVALGKENEAQVALKQASSLESKTYIN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3987g00020 488 Coils Coil 486 488 - -
Pral3987g00020 488 Gene3D Tetratricopeptide repeat domain 385 487 IPR011990 GO:0005515
Pral3987g00020 488 SMART tpr_5 418 451 IPR019734 GO:0005515
Pral3987g00020 488 SMART tpr_5 452 485 IPR019734 GO:0005515
Pral3987g00020 488 Gene3D Transferase(Phosphotransferase) domain 1 138 329 - -
Pral3987g00020 488 SUPERFAMILY TPR-like 387 484 IPR011990 GO:0005515
Pral3987g00020 488 SUPERFAMILY Protein kinase-like (PK-like) 39 322 IPR011009 -
Pral3987g00020 488 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Pral3987g00020 488 ProSiteProfiles Protein kinase domain profile. 61 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3987g00020 488 Pfam Tetratricopeptide repeat 420 451 IPR019734 GO:0005515
Pral3987g00020 488 Pfam Protein tyrosine and serine/threonine kinase 73 311 IPR001245 GO:0004672|GO:0006468
Pral3987g00020 488 FunFam probable serine/threonine-protein kinase At4g35230 33 136 - -
Pral3987g00020 488 Gene3D Phosphorylase Kinase; domain 1 31 136 - -
Pral3987g00020 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 30 484 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3987g00020 Pral-Chr3987 966132 974645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3987g00020 31 312 Glycoside Hydrolase AT3G07070 35.161 8.33e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Pral3987g00020 PK_Tyr_Ser-Thr 2.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3987g00020 K14500 - qsa:O6P43_034239 681.789