Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3987g00013 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCAGCTTCATATTACATGCATAGAGGAGATGTTTCTGGGTCTGGCTCTGGAACACAAGCCCAGGGGTTCCAACAATCGCCTCCTGGGTTTAGACCTTTGTCAAACGTTGGCTTTCAAGCTCAGTCAAATGTCCGAGGTGGTTCTGTGGGTTCCACATTTTCAGTAGAGCCTCCTCGTAACAATTTTAGTCAAGGCATTAACATAAGTTCCTCTCCTGGAGTACCATCTTCAGGTGAGCCCTTGAAAAAGAAGAGAGGAAGGCCTCGTAAATACGGTCCTGATGGCCCTGTTTCTTTGGGACTGTCTCCCATGTCTGCAACGGCTAATTCTACCCCAGGTTCAGGCACGCCTTCCCATAAACGGAATAGAGGACGTCCACCTGGTTCTGGCAGGAAGCAGCAGCTAGCGGCTCTAGGTGAATGGATGAACAGTTCAGCCGGACTTGCTTTTGCACCTCATGTTATCACAATTGGAGCTGGGGAGGACATTGTAGCAAAGTTATTGTCTTTGTCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCAGGCACTGGCACCGTTTCTTCAGTCACTCTGCGCCAACCTGCTTCAACAAACATCAGCCTCACTTATGAGGGCCGATTTCAAATTTTATGCTTGTCTGGCTCATACTTGGTCGCTGAAGATGGTGGACCTCGTGATAGAACAGGTGGTTTGAGTGTTTCCCTTTCTAGCCCTGATGGTCATGTAATTGGTGGTGGTGTTGCTGTGCTTATTGCAGCAGGCCCAGTTCAGGTGGTGGTATGCAGTTTTGTATATGGAAGTGCTAAGATGAAGACAAAGCAAGTAACCTCTCCCAAGGCTGAGAAGAATTCTGAGCCTCAGTCTCATCCTCATCCTCATCCTCAGCCTCAGCATGATGGTAACAAGTTAAATAGCCCCATTACTCCAGGAAGTGCTCAGAACTACACATTGTCTGCATCAGCCATGTGGCCAGGAGATTTGAAAAGCTCTCACACACATACTCGAACTGGTATCGACTTGACCCGTGGCTGA 1071 0.4874 MDGREAMAFSGGSASYYMHRGDVSGSGSGTQAQGFQQSPPGFRPLSNVGFQAQSNVRGGSVGSTFSVEPPRNNFSQGINISSSPGVPSSGEPLKKKRGRPRKYGPDGPVSLGLSPMSATANSTPGSGTPSHKRNRGRPPGSGRKQQLAALGEWMNSSAGLAFAPHVITIGAGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNISLTYEGRFQILCLSGSYLVAEDGGPRDRTGGLSVSLSSPDGHVIGGGVAVLIAAGPVQVVVCSFVYGSAKMKTKQVTSPKAEKNSEPQSHPHPHPQPQHDGNKLNSPITPGSAQNYTLSASAMWPGDLKSSHTHTRTGIDLTRG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3987g00013 356 Gene3D - 164 295 - -
Pral3987g00013 356 CDD DUF296 164 276 IPR005175 -
Pral3987g00013 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Pral3987g00013 356 MobiDBLite consensus disorder prediction 285 356 - -
Pral3987g00013 356 MobiDBLite consensus disorder prediction 15 146 - -
Pral3987g00013 356 MobiDBLite consensus disorder prediction 114 130 - -
Pral3987g00013 356 ProSiteProfiles PPC domain profile profile. 156 298 IPR005175 -
Pral3987g00013 356 MobiDBLite consensus disorder prediction 311 344 - -
Pral3987g00013 356 MobiDBLite consensus disorder prediction 24 88 - -
Pral3987g00013 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 326 IPR039605 GO:0003680
Pral3987g00013 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3987g00013 Pral-Chr3987 646282 650671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3987g00013 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.773 1.36e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3987g00013 - - qsa:O6P43_034235 471.085