Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3987g00005 ATGGGATCCACTTCGGCGACCAGGTTAACAGAGTACAGTAACTGGAGGTGCGTCAGCAATTACCACTTCCAGTGCTGCGCCAACTTGTCGCCGGAGCCACACTATCCGTCGATGACGAGATTTCCGAGAGGCTCCTCGCAGGAAGAGGCGTTGAGATCGCCGGAAGCCAAAGCAGTTTTGAAAGTCACCGGGATGACGTGCGCCGCCTGTGCTGGGTCCGTGGAGAAAGCCGTCAAACGCCTCCCTGGAATTCGCGACGCCGTCGTCGATGTCTTGAACGATAAAGCGCTGGTTCGCTACTTTCCGGCGATGGTTACTGAGGAGAGAATAAAAGAGGCCATTGAGGACGCTGGATTTGAAGCCAAGTCCATCGAAGAAGAATCAAAAGAGAAGCCTTCTCAAATTTGCCGAATACACATAAACGGTATGACTTGTACTTCTTGCTCCTCTACTGTTGAGTCCGTTCTTCAAGCCATTCTTGGAGTGCAGAAAGCACAAGTGGCCTTGGCAACTGAAGAAGCTCAAGTCCGTTATGACCCAAAGATTGTCACCTACAATCACCTAAAGGAAGCCATTGAAGATGCAGGATTTGAAGCCATATTAATAAGCACAGGTGAACACATAAGCAAGATAGCATTGAAAATTGAAGGCCTTAAAACTGATCAACCTTTGAGGGCGATTGAAAAGTCTATCCAATCACTTCTAGGAGTTGAAAACATAGACATTAATGAAGAAATGAAGAAGGTTTCCATTTCATATAAACCCTATATGACAGGACCTAGAACTTTCATTGAAGTCATAGAATCTTTAGGGTCTGGGGGTTTCAAGGCTATGATATATCCTGATGGAGAAGGAAGGGAGACTAACAAAGAAGAGGAAATCAAGAGATACTTCAAGTTATTCATATGGAGTTTGGCTTTCTCCATTCCAATATTTCTAACATCTATGATCCTTATGCATGTTCCTGGAATTCAGCGTGTTTTATATATGAAAGTGGTGAACAATCTGACTATTGGACTCCTCATTAGGTGGGAATTTTCGACCCCAGTGCAGTTCTTCATAGGCAGGAGATTCTACATTGGGGCATACAAATCTGTACTCAATGGTTCCGTTAACATGGATGTATTGATTGCCTTGGGAACAAATGCAGCTTACTTCTATTCTGTATATGTTACAGTTAGAGCAGCTTTATCCAGAGACTTCATGGGCAGCGACTTTTTTGAGACCAGCTCTATGCTTATCTCATTTATTCTTTTAGGCAAGTATTTGGAAGTGTTAGCAAAGGGAAAGACTTCACAAGCCATTGCCAAACTTATGGAATTGACTCCTGACACAGCAATCTTGTTAACTTTAAATGATGAAGGCAATGTAACAAGTGAACAACAAATAGATAGCCGATTGATACAAAAAGATGATGTGATAAAAATTGTACCCGGTGCCAAAGTAGCATCAGATGGTTTTGTGATTTGGGGACAAAGCCACATAAATGAGAGTATGATAACAGGAGAAGCCAAGCCTGTGGCAAAGAGGAAGGGCGACATGGTGATTGGAGGCACTGTGAATGACAATGGGGTTTTGCATGTGAAGGTAACAAGAGTTGGATCAGAGTGCGCCCTCCGACAGATTGTTCAACTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTTCAGAAGCTTGCAGACCGTATTTCCAAATACTTTGTGCCATTGGTTATAATGCTTTCTCTTGCAACTTGGGTTTCCTGGCTTGTAGCTGGACAATTACATGCATACCCGAAATCTTGGATTCCATCCTCCATGAACAACTTTGAGCTTGCACTTCAGTTTGGGATCTCTGTGATGGTCATAGCTTGTCCTTGTGCTTTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACTGGAGTTGGTGCGACTCAAGGCGTGTTGATCAAAGGTGGCCAAGCATTAGAAAAGGCACATAAGGTGAGTTGCATTGTCTTTGATAAGACGGGAACTCTAACAATTGGAAAGCCAGTCGTTAGTACCACAGAACTCTTCAAGAAGATAACACTACAAGATTTCTACAAATTTGTTGTTGCAATTGAGGTGAACAGTGAACACCCAATAGCCAAGGCCATAGTTAAGCATGCTGAGAAGGCCATAAAAGATTATGAGAACCTTGATTGGCCAGAAGTGCGAGATTTTCTTTCCATTTCAGGCCATGGAGTAAAAGCCATTGTTCGAGACAAGGAAATAATAGTTGGGAATAAGAAGTTGATGCAGGATCATAACATAGTCATTCCCGTAAAAGCTGAAGAAACACTAGCAAAGGCTGAAATGTTGGCACAAACAGGAATTCTAGTGTCCATAGGTAGAGAAATTGCAGGAGTCCTAGCAATTTCCGATGCGTTGAAACCAAGTGCCAAAGAAGTCATTTCCATTCTTAACTCCATGAAAATCAAGAGCGTCTTGGCGACAGGAGATAACTGGGGAACTGCAAATTCCATTGCCAGACAAGTTGGGATTGAAACTGTCATAGCTGAAGCTCAACCTGAGGTTAAAGCAAACAGAGTAAAAGATTTGCAGACTTCTGGCTACACCGTGACAATGGTAGGAGATGGCATCAATGATTCACCAGCACTTGTGGCGGCTGATGTAGGAATGGCGATTGGTGCTGGCACAGATATTGCTATTGAGGCAGCTGACATAGTGCTCATGAAGAGCAACTTAGAAGACATAATAATTGCTATTGACCTTGCAAAGAAAACTTTCTCTAGGATTCGTCTAAACTACATTTGGGCTTTAGGATATAATCTACTAGCAATTCCAATAGCTGCTGGAATCCTTTACCCATCTACTAAATTCCGCTTACCGCCATGGATTGCTGGAGCTGCAATGGCAGCATCTTCCGTCAGTGTTGTTTGCTCCTCCCTCTTGTTAAAGAACTATAAGAGACCCCCGAAGCTAAATAACTTGGAGATAAATGGTATTAAGATTGAATAA 2985 0.4318 MGSTSATRLTEYSNWRCVSNYHFQCCANLSPEPHYPSMTRFPRGSSQEEALRSPEAKAVLKVTGMTCAACAGSVEKAVKRLPGIRDAVVDVLNDKALVRYFPAMVTEERIKEAIEDAGFEAKSIEEESKEKPSQICRIHINGMTCTSCSSTVESVLQAILGVQKAQVALATEEAQVRYDPKIVTYNHLKEAIEDAGFEAILISTGEHISKIALKIEGLKTDQPLRAIEKSIQSLLGVENIDINEEMKKVSISYKPYMTGPRTFIEVIESLGSGGFKAMIYPDGEGRETNKEEEIKRYFKLFIWSLAFSIPIFLTSMILMHVPGIQRVLYMKVVNNLTIGLLIRWEFSTPVQFFIGRRFYIGAYKSVLNGSVNMDVLIALGTNAAYFYSVYVTVRAALSRDFMGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMELTPDTAILLTLNDEGNVTSEQQIDSRLIQKDDVIKIVPGAKVASDGFVIWGQSHINESMITGEAKPVAKRKGDMVIGGTVNDNGVLHVKVTRVGSECALRQIVQLVESAQMAKAPVQKLADRISKYFVPLVIMLSLATWVSWLVAGQLHAYPKSWIPSSMNNFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALEKAHKVSCIVFDKTGTLTIGKPVVSTTELFKKITLQDFYKFVVAIEVNSEHPIAKAIVKHAEKAIKDYENLDWPEVRDFLSISGHGVKAIVRDKEIIVGNKKLMQDHNIVIPVKAEETLAKAEMLAQTGILVSIGREIAGVLAISDALKPSAKEVISILNSMKIKSVLATGDNWGTANSIARQVGIETVIAEAQPEVKANRVKDLQTSGYTVTMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIRLNYIWALGYNLLAIPIAAGILYPSTKFRLPPWIAGAAMAASSVSVVCSSLLLKNYKRPPKLNNLEINGIKIE 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3987g00005 994 PRINTS Copper-transporting ATPase 1 signature 57 82 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase 1 signature 112 132 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase 1 signature 83 106 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase 1 signature 158 179 - -
Pral3987g00005 994 Gene3D - 52 123 - -
Pral3987g00005 994 FunFam Copper-transporting ATPase HMA5 133 204 - -
Pral3987g00005 994 CDD HMA 225 271 IPR006121 GO:0046872
Pral3987g00005 994 SFLD p-type atpase 642 916 IPR044492 -
Pral3987g00005 994 SUPERFAMILY HMA, heavy metal-associated domain 205 272 IPR036163 GO:0046872
Pral3987g00005 994 SUPERFAMILY HMA, heavy metal-associated domain 134 206 IPR036163 GO:0046872
Pral3987g00005 994 Gene3D - 133 205 - -
Pral3987g00005 994 NCBIfam copper ion binding protein 138 199 IPR006122 GO:0005507
Pral3987g00005 994 NCBIfam copper ion binding protein 59 121 IPR006122 GO:0005507
Pral3987g00005 994 ProSiteProfiles Heavy-metal-associated domain profile. 209 275 IPR006121 GO:0046872
Pral3987g00005 994 SUPERFAMILY Calcium ATPase, transduction domain A 460 546 IPR008250 -
Pral3987g00005 994 ProSiteProfiles Heavy-metal-associated domain profile. 134 200 IPR006121 GO:0046872
Pral3987g00005 994 ProSitePatterns Heavy-metal-associated domain. 62 91 IPR017969 GO:0046872
Pral3987g00005 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 410 651 IPR023298 -
Pral3987g00005 994 CDD HMA 140 199 IPR006121 GO:0046872
Pral3987g00005 994 FunFam Copper-transporting ATPase 1, putative 428 550 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 569 583 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 842 859 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 938 952 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 430 448 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 358 377 - -
Pral3987g00005 994 PRINTS Copper-transporting ATPase signature 410 429 - -
Pral3987g00005 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 662 668 IPR018303 -
Pral3987g00005 994 Gene3D - 627 922 IPR023214 -
Pral3987g00005 994 ProSiteProfiles Heavy-metal-associated domain profile. 56 122 IPR006121 GO:0046872
Pral3987g00005 994 FunFam Copper-transporting ATPase HMA5 55 126 - -
Pral3987g00005 994 Gene3D - 428 550 - -
Pral3987g00005 994 NCBIfam HAD-IC family P-type ATPase 413 944 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 812 822 - -
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 888 900 - -
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 790 801 - -
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Pral3987g00005 994 PRINTS P-type cation-transporting ATPase superfamily signature 660 674 - -
Pral3987g00005 994 Gene3D - 667 745 IPR023299 GO:0000166
Pral3987g00005 994 Gene3D - 746 796 IPR023299 GO:0000166
Pral3987g00005 994 SFLD C1.7: P-type atpase like 642 916 - -
Pral3987g00005 994 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 26 991 - -
Pral3987g00005 994 NCBIfam heavy metal translocating P-type ATPase 373 974 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral3987g00005 994 FunFam Probable copper-transporting ATPase HMA5 765 922 - -
Pral3987g00005 994 SUPERFAMILY HAD-like 659 971 IPR036412 -
Pral3987g00005 994 CDD P-type_ATPase_Cu-like 301 961 - -
Pral3987g00005 994 Gene3D - 211 279 - -
Pral3987g00005 994 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Pral3987g00005 994 Pfam Heavy-metal-associated domain 59 120 IPR006121 GO:0046872
Pral3987g00005 994 Pfam Heavy-metal-associated domain 138 198 IPR006121 GO:0046872
Pral3987g00005 994 CDD HMA 59 122 IPR006121 GO:0046872
Pral3987g00005 994 Pfam haloacid dehalogenase-like hydrolase 657 879 - -
Pral3987g00005 994 SUPERFAMILY HMA, heavy metal-associated domain 54 127 IPR036163 GO:0046872
Pral3987g00005 994 Pfam E1-E2 ATPase 455 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3987g00005 Pral-Chr3987 459851 478819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3987g00005 54 994 Primary Pumps ATPases AT1G63440 70.370 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3987g00005 K17686 - gmx:100817431 1454.11