Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3981g00002 ATGGAGGAGGAAGAACATGAGGTGTACGGAGGCGACATCCCAGATATGGGCGAGATGGAAGGAGATATGGATTCGCACCATGCCGATGTCGATATGTCTGCTGCTGACGACGACGCCGTCAAGGAGCTGGACGAGATGAAGAAAAGATTGAAGGAAATGGAAGAGGAAGCCGCTGCTCTCCGTGAAATGCAAGCCAAGGTCGAGAAGGAGATGGGCGCGGTTCAAGATCCTGCGAGTGCAGCTGCTTCTCACGCAAGCAAGGAGGAGGCAGATACTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAGCACTTCCAGTCATGTGGGACAGTGAATAGGGTGACTATCCTTACAGACAAGTTTGGTCATCCAAAAGGTTTTGCTTATGTGGAATTCCTTGAACCTGAAGCTGTTCAAGAGGCTCTTGTCTTGAATGAATCTGAATTGCATGGTCGTCAATTGAAGGTCATGCCAAAAAGGACCAATGTCCCTGGAATGAAACAGTATCGCCCTAGGCGTTTTAATCCTTACATGGGGTATCGCTTCAGGAGGCCTTTCCCTCCTCCTTACTTTTACTCGCCTTATGGATACGGGAAGGTTCCCAGGTTCAGAAGGCCAAGTCGATACATGCCATATTATTAG 666 0.4865 MEEEEHEVYGGDIPDMGEMEGDMDSHHADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASHASKEEADTRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEPEAVQEALVLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPYMGYRFRRPFPPPYFYSPYGYGKVPRFRRPSRYMPYY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3981g00002 221 Coils Coil 36 70 - -
Pral3981g00002 221 SUPERFAMILY RNA-binding domain, RBD 85 191 IPR035979 GO:0003676
Pral3981g00002 221 MobiDBLite consensus disorder prediction 71 91 - -
Pral3981g00002 221 Gene3D - 19 176 IPR012677 -
Pral3981g00002 221 FunFam Polyadenylate-binding protein 1 32 165 - -
Pral3981g00002 221 SMART rrm1_1 94 165 IPR000504 GO:0003723
Pral3981g00002 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Pral3981g00002 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Pral3981g00002 221 MobiDBLite consensus disorder prediction 1 25 - -
Pral3981g00002 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 177 - -
Pral3981g00002 221 CDD RRM_II_PABPs 94 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3981g00002 Pral-Chr3981 37176 41729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3981g00002 90 189 Eukaryotic Initiation Factors Gene Family AT2G36660 30.000 2.14e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3981g00002 K14396 - zju:107425313 348.206