Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00035 ATGGCACAGACAAACGGAAGCGTGCCGGTGAAAGTAGGAATCGTACTTGATCTTTCTTCTCCAGCAGCAAAGATGGGGTTGAGCTGTATCAATATGTCCCTCTCTGACTTTTACGCCTCTCACCCTCATTATAAAACCAGGCTCGTCTTCTTCGTCAGGGACTCCCACTCGGACGTTGTTTCTGCAGCTTCTCAAGGTCTGGATCTCATAAAATCAGAGAAAGTGCAGGCCATAATAGGCCCATTGACGTCAATGCAAGCCAGCTTTTTGATCAGTCTTGGAGACAAAGCTCGTGTTCCCATCATAACTTTCTCAGCAACAAGTCCTTCTCTCGCTTCCCTCCCAAGTGCATATTTTTTTCGAATTGCGCAGACTGATTCAGCCCAGATGAGCGCCATTGGTGCAATCGCACAGGCTTTTGGGTGGAAAGAAGCAGTGCCAATTTACGTAGACAACGAGTATGGGAAGGGGGTCATACCCTTCTTGACTAATGCTCTTCAACAAGTGTATGTTCGAATCCTATATCAGAGTTCTATTTCAGCTTCAGCCACTGATGAAGATATCAGAGCAGAGCTCTACAAGTTGATGACAATGCAAACCAGAGTGTTTGTTGTGCACATGAACCCCAATCCGGGCGTGAGACTCTTCAACATTGCAAGACAGATTGGAATGATGAGCAAGGGATACGTTTGGATAGTGACAGATGGTTTGGCTAATGGATTAAGCTCTTTGAATTCCTCAGTCATAGAATCAATGGAAGGAGTGCTGGGCGTGAGGACCTATATTCCCAAAACAGAGCGGTTGGATGACTTCAAATTTCGATGGAAAAGAAGATTCCTACAAGACAATCCCACCCTTGTTGATACTCATTTGAATGTTTTTGGAGTATGGGCTTACGATGCTGCCACAGCGTTAGCTATGGCTATTGAGAAGGTTGCCACCAACAATCTTGGGTTTGCTGCGAGCAATGGTTCGTCCAGTTCAACTGATTTGGAAAGGATTGGAGTTTCAAAAAGTGGTGAACAGCTGCGTGAAGCCTTATCAAACACTACATTCACAGGCCTCAGCGGAGAATTCAGCATTGTTAAGAGGCAACTGCAAGCTTCAATGTTTGAGATATTGAACGTGATTGGGATTGGAGGAAGAACGATTGGGTTTTGGACACCACAAAACGGAATAGTCAGAAATCTAGACTCAACTAACACCAAAATATATTCTACATCAAGTGAGAATCTGGGTTCGATTATATGGCCAGGGGACACGAACTCTGTTCCAAAGGGATGGCAAATCCCCACAAATGCAAGGAAATTAAGGATAGGGGTGCCGGTGAAAAATGGTTATCCTGAATTCGTGGATGTATCTCATGACCCCATCACTAATACAACAAAGGTCACCGGATTTTGCATTGATGTGTTCAAAGCAATGCTGGAAGTTCTCCCTTATGCCTTACCCTATGAATTTATCCCTTTTGTCAAACCCAATGGCGAGAGTGCAGGATCATATAATGAGCTGATCAGCCAAGTTTATTTTGGGAAATTTGATGCCGTGGTTGGGGATGTAACAATTATAGCTAACAGGTCAGAGTATGTGGATTTCACTTTGCCGTACACTGAATCTGGTGTCACAATGGTGGTTCCAGTAAAAGACAAAAGGAAGAAGAATGCATGGGCCTTCTTAAAGCCACTGACTTGGGATCTCTGGGTAACAATAGCTTGTTCTTTTGTATTCGTTGGGTTTGTTGTGTGGGTGCTTGAACACCGAATAAACGGGCATTTCAGAGGGCCCCCATTGCACCAGATTGGAACATGCTTGTGGTTTTCATTCTCGACCATGGTTTTTGCCCATCGAGAAAAAGTGGTGAGCAACTTGAGCAGATTTGTGGTGATTATATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGCTACACTGCTAGTCTGACGGCACTTTTGACGGTTGAGCAGCTCAACCCAACTGTAACTGACGTTAATTTACTCATAAAGAAGAGAATGAATGTTGGTTACAAGAAAGGCTCGTTTATGCGGGAAATCTTGAAGGAAATGGGTTTCCTCGATTACCAACTTCAAACCTATAAATCCACAGAGGAATGCAACGAACTCTTTGCAAGAGGAAGTGCAAATGGTGGCATTGCAGCGGCATTTGATGAAGTTCCATACGTGGTGAAAGTCTTTCTTCAAAGTTACTGTTCTAAGTATGCCATGGTCGAGCCAACTTTTAAGACTGGCGGCTTTGGATTTGTGTTGCCTAAAGGTTCTCCTCTCGTGGCTGACATTTCAAGGGCAGTCCTGAACGTAACACAAGGAGATAAAATGAAGGTCATAGAGAATGCGTGGTTCAGAAAAAACAACTGTCCAGATTCTGATACCCCAATTTCATCAAACAGTCTTGGACTCGAAAGCTTCTGGGGACTATTTCTTATTGTAGGGGTTTCTTCTGCTGTGGCTCTAATTTTCTTCGCCGTTAACTTCCTACATCAGCAGAAGCAAATCTGGTTATGTAATGATCCCAGTACCTCAAAGTGGAGACGAATTGGGAAGTTGATAAAGAAGTTTGATCAGAGGGACCTGAGTTCTCACACCTTCAGAAAAAAAGAAATGCAGAGTAGGAGTGAAAATTATAGCACACATGATATACCTGAGGTTGAGGCATCTCCACCTACAGACTGCCCCCCAAGTCCGTCTAGTCAATCTGAATCAGAATCAAGTTTCTCATTTTATAGTGAGGCTAGCCCAAATAGGCCTCTGCCACAAGACACGTAA 2778 0.4381 MAQTNGSVPVKVGIVLDLSSPAAKMGLSCINMSLSDFYASHPHYKTRLVFFVRDSHSDVVSAASQGLDLIKSEKVQAIIGPLTSMQASFLISLGDKARVPIITFSATSPSLASLPSAYFFRIAQTDSAQMSAIGAIAQAFGWKEAVPIYVDNEYGKGVIPFLTNALQQVYVRILYQSSISASATDEDIRAELYKLMTMQTRVFVVHMNPNPGVRLFNIARQIGMMSKGYVWIVTDGLANGLSSLNSSVIESMEGVLGVRTYIPKTERLDDFKFRWKRRFLQDNPTLVDTHLNVFGVWAYDAATALAMAIEKVATNNLGFAASNGSSSSTDLERIGVSKSGEQLREALSNTTFTGLSGEFSIVKRQLQASMFEILNVIGIGGRTIGFWTPQNGIVRNLDSTNTKIYSTSSENLGSIIWPGDTNSVPKGWQIPTNARKLRIGVPVKNGYPEFVDVSHDPITNTTKVTGFCIDVFKAMLEVLPYALPYEFIPFVKPNGESAGSYNELISQVYFGKFDAVVGDVTIIANRSEYVDFTLPYTESGVTMVVPVKDKRKKNAWAFLKPLTWDLWVTIACSFVFVGFVVWVLEHRINGHFRGPPLHQIGTCLWFSFSTMVFAHREKVVSNLSRFVVIIWVFVVLILVQSYTASLTALLTVEQLNPTVTDVNLLIKKRMNVGYKKGSFMREILKEMGFLDYQLQTYKSTEECNELFARGSANGGIAAAFDEVPYVVKVFLQSYCSKYAMVEPTFKTGGFGFVLPKGSPLVADISRAVLNVTQGDKMKVIENAWFRKNNCPDSDTPISSNSLGLESFWGLFLIVGVSSAVALIFFAVNFLHQQKQIWLCNDPSTSKWRRIGKLIKKFDQRDLSSHTFRKKEMQSRSENYSTHDIPEVEASPPTDCPPSPSSQSESESSFSFYSEASPNRPLPQDT 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00035 925 CDD GluR_Plant 435 785 - -
Pral3978g00035 925 Gene3D - 336 436 - -
Pral3978g00035 925 FunFam Glutamate receptor 555 685 - -
Pral3978g00035 925 MobiDBLite consensus disorder prediction 865 925 - -
Pral3978g00035 925 Gene3D - 127 292 - -
Pral3978g00035 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 868 IPR015683 -
Pral3978g00035 925 FunFam Glutamate receptor 2.7 692 792 - -
Pral3978g00035 925 SUPERFAMILY Periplasmic binding protein-like I 9 419 IPR028082 -
Pral3978g00035 925 Pfam Ligand-gated ion channel 787 816 IPR001320 GO:0015276|GO:0016020
Pral3978g00035 925 Gene3D - 555 680 - -
Pral3978g00035 925 Pfam Receptor family ligand binding region 29 377 IPR001828 -
Pral3978g00035 925 Gene3D - 437 554 - -
Pral3978g00035 925 FunFam Glutamate receptor 436 555 - -
Pral3978g00035 925 SUPERFAMILY Periplasmic binding protein-like II 414 788 - -
Pral3978g00035 925 FunFam Glutamate receptor 300 435 - -
Pral3978g00035 925 SMART GluR_14 436 787 IPR001320 GO:0015276|GO:0016020
Pral3978g00035 925 Pfam Bacterial extracellular solute-binding proteins, family 3 461 786 IPR001638 -
Pral3978g00035 925 FunFam Glutamate receptor 131 289 - -
Pral3978g00035 925 CDD PBP1_GABAb_receptor_plant 11 397 IPR044440 -
Pral3978g00035 925 Gene3D - 681 792 - -
Pral3978g00035 925 PIRSF IGluLR_plant 1 920 IPR017103 -
Pral3978g00035 925 MobiDBLite consensus disorder prediction 899 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00035 Pral-Chr3978 251759 255268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00035 5 906 Ion Channels AT2G29120 53.245 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00035 K05387 - qsa:O6P43_019170 1171.38