Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00034 ATGGGAAGGAAAAAAGGAGAAATTCCGAGCCGAGTTTCGTACCCGGGAAACACTATAAATACGCATTTCTTTGACCTGCACATTAACTTCACAAAGCTTGATTCGCTTGACATCAAGATGATGAAGAAGATGGCGTGCCTTCTGATCTTGCTTATGTGGACTCTTACTTGTTTCCTGATCGGAGCAGGGGCTCAGACAAACGCGACTGTGCCGGTGAAAGTAGGAATCGTACTTGATCTTTCGTCGACCACGGCCAAGATGGGTTGGAGCTGTATCAACATGTCCCTCTCTGACTTTTATGCTTCTCATTCTCATTACAAAACCAGACTCGTTTTCACCGTCAGGGACTCCCACGGAGACGTCGTTACTGCTGCTGCTCGAGCTGTAGATCTCATCAAAACAGAGCAAGTGCAAGCCATAATAGGACCATCGACATCAATGGAGGCCAACTTTGTGATCAGTCTTGGAGCCGAAGCTCATGTGCCCATCCTAACCTTCTCGGCAACTAGTCCTTCTCTTGCTTCTCTTGGGAACCCATACTTCTTTCAGATTGCACAGAACGATTCGGCTCAAGTGAATGCCATTAACGCAATCGTGCAAGCTTTTGGGTGGAAAGAAGCAGTGCCCATTTACGTCGACAACGACTGCGGGAAAGGGGCCATACACTCCCTAACTAATGCTCTTCAACAAGCCTATGTTCGAATCCCATATATGAGTGGCATTTCACCTTCAGCCACGGACGAGGAAATCAAAACAGAGCTCTCCAAGTTGATGACCAATCAAACCAGAGTGTTCGTTGTGCATATGTCCACCAATATTGGCACTCGTCTCTTCTCCATAGCAAAACAGATTGGTATGATGAGCAAAGGCTATGTTTGGATCGTAACCGATGGTTTGGGTAATGTGTTGGATTCCTTCGACTCCTCAGTCATAGAATCAATGCAAGGAGTATTGGGTGTCAAGAGTTATGTTCCTAAAACGAAAAAACTTGATGATTTTGAAGTCAGATGGAAAAGGAAGTTCATTCAAGACAATCCAACCCTTTCTGGCAGAAATCTGAAAGTGTTTGGATTGTGGGCTTATGATGTTACCAGGGCTTTAGCCATGGCTGTTGAGCAAGTCGGCACCAGCAATCTTGGCTTCGATATGAGCAACGCTTCAGGCAATTCTTCCGATCTTCAAAGCTTGGGAGTATCACCAAATGGGGAAAAGCTGCGTGAAGCCATATCCAGAATCAAATTCAGAGGCCTGAGTGGAGAGTTCAATGTTGTTAACGGACAACTGCCAGCATCAACGTTTGAGATAGCAAACGTGGTTGGTAATGGGCAAAGAACAATAGGATTTTGGACACCACAAAATGGACTCGTTCGAAATCTCAGTTCGACGAACACAAGCACATATTCTGCATCAAAGAAGGATCTAGCGAAAGTAATATGGCCAGGGGAACCAAACTCTGTTCCAAAGGGTTGGGAAATCCCTGTAAAAGGAACAAAGTTGAGAGTAGGCGTACCGGTGAAAGCGGGTTACAAGGAATTCGTGAACGCAACACTTAATCCAATCACAAATCATACAAAATTCGAAGGACTCTGCATTGACGTGTTCGGGGCTGTGGTGCAAGCATTGCCGTACGACCTGCCGTATGAATTCATCCCATTTCCTAAAATGGAAGCTGTGATTAGTACAACTCCAATGTACAACGACCTTATCAGCCAAGTATATTTTGGGAACTTTGATGCGGCGGTGGCGGATATAACGATCATAGCAAACAGGTCGAACCATGTGGATTTCACTTTTCCGTACACTGAATCTGGTGTAACAATGATTGTTCCGGTGAAAGACAAAAGGAAGAAGAATGCGTGGGCTTTCTTACAGCCACTGACTTGGGATCTTTGGGTGACAACTGCTTGTTCCTTTGTATTTATTGGGTTCGTTGTGTGGGTGCTTGAACACCGAATAAACGAACATTTCAGAGGGCCTCCGTCACATCAAATTGGCACCAGCCTATGGTTTTCTTTATCAACCATGGTTTTTGCCCATCGAGAGAGAGTGGTGAGCAACTTGAGTAGATTTGTGGTGATCATATGGATATTTGTGGTTCTAATTCTGAGTCAAAGTTATACTGCAAGTTTGACGTCGCTCTTGACAGTTGAACAGCTTAGCCCAACTGTGAAGGATGTGAATATGCTTATAAAGAATAGATTGAATGTTGGTTATATGGAAGGTTCTTTTGTGTACGAAGTTTTGAAAGACATGGGTTTTCAAGATTATCAACTCAAAATTTATAATTCCACCGAAAGTTGCCATGAATTATTTGAAAGAGGAATTGAAAATGGTGGAATCGCTGCTGCGATTGATGAAATCCCATACGTAAAACTCTTTCTTGGGAATTATTGCTCCAAGTACACCACAGTTGATCCAACTTTCAAAACTGGGGGCTTTGGCTTTGCTTTTCCAAAAGGTTCTCTTCTGATAGCTGACATTTCAAGAGCGATCTTGAACGTGACACAAGGCGAAAAAATGAAAACAATAGAAAATAAATGGTTGAATGGAAATAAATGTCCAGATTCCAAGGCCTTAGTTTCTTCAAACAGCCTTGGCCTTGAGAGCTTCTGGGGCTTATTTCTCATTGCAGGGCTTGCTTCTGTATCATCACTCATCATCTTCGCCGTCACATTCCTCCACCAGAACAGAAACATGTGGTCAGGCTATAATGGCGGCGCATCAATATGGAGGAGAATAAAGATGTTGCTGAGGATTTTTGACCAAAGAGACGAGAGCTCTCACACTTTCAGGAAAAAGGAAAGGGCGAGTCCTACTCATGGGTTGGGTCCAGTTGAAGCCTCTCCGACATCACAGTGTCCCCCAAGTCCATCAAGCGAAGGCGAATTCGACTTTTCCCTTAATGGAAACGGTGCGGTGTTTTCTGGAGAGTTTGGTGATGCTAATCCGCCAAATGCCTATCTGCCTCAAAACGCAGAAATAACCGTCCGCCACTGGATACAGCCTACTTAA 3012 0.4426 MGRKKGEIPSRVSYPGNTINTHFFDLHINFTKLDSLDIKMMKKMACLLILLMWTLTCFLIGAGAQTNATVPVKVGIVLDLSSTTAKMGWSCINMSLSDFYASHSHYKTRLVFTVRDSHGDVVTAAARAVDLIKTEQVQAIIGPSTSMEANFVISLGAEAHVPILTFSATSPSLASLGNPYFFQIAQNDSAQVNAINAIVQAFGWKEAVPIYVDNDCGKGAIHSLTNALQQAYVRIPYMSGISPSATDEEIKTELSKLMTNQTRVFVVHMSTNIGTRLFSIAKQIGMMSKGYVWIVTDGLGNVLDSFDSSVIESMQGVLGVKSYVPKTKKLDDFEVRWKRKFIQDNPTLSGRNLKVFGLWAYDVTRALAMAVEQVGTSNLGFDMSNASGNSSDLQSLGVSPNGEKLREAISRIKFRGLSGEFNVVNGQLPASTFEIANVVGNGQRTIGFWTPQNGLVRNLSSTNTSTYSASKKDLAKVIWPGEPNSVPKGWEIPVKGTKLRVGVPVKAGYKEFVNATLNPITNHTKFEGLCIDVFGAVVQALPYDLPYEFIPFPKMEAVISTTPMYNDLISQVYFGNFDAAVADITIIANRSNHVDFTFPYTESGVTMIVPVKDKRKKNAWAFLQPLTWDLWVTTACSFVFIGFVVWVLEHRINEHFRGPPSHQIGTSLWFSLSTMVFAHRERVVSNLSRFVVIIWIFVVLILSQSYTASLTSLLTVEQLSPTVKDVNMLIKNRLNVGYMEGSFVYEVLKDMGFQDYQLKIYNSTESCHELFERGIENGGIAAAIDEIPYVKLFLGNYCSKYTTVDPTFKTGGFGFAFPKGSLLIADISRAILNVTQGEKMKTIENKWLNGNKCPDSKALVSSNSLGLESFWGLFLIAGLASVSSLIIFAVTFLHQNRNMWSGYNGGASIWRRIKMLLRIFDQRDESSHTFRKKERASPTHGLGPVEASPTSQCPPSPSSEGEFDFSLNGNGAVFSGEFGDANPPNAYLPQNAEITVRHWIQPT 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00034 1003 Gene3D - 189 352 - -
Pral3978g00034 1003 FunFam Glutamate receptor 362 497 - -
Pral3978g00034 1003 SUPERFAMILY Periplasmic binding protein-like I 72 491 IPR028082 -
Pral3978g00034 1003 Gene3D - 619 749 - -
Pral3978g00034 1003 Pfam Receptor family ligand binding region 92 440 IPR001828 -
Pral3978g00034 1003 Gene3D - 750 855 - -
Pral3978g00034 1003 FunFam Glutamate receptor 2.7 756 855 - -
Pral3978g00034 1003 Pfam Ligand-gated ion channel 850 880 IPR001320 GO:0015276|GO:0016020
Pral3978g00034 1003 CDD PBP1_GABAb_receptor_plant 73 459 IPR044440 -
Pral3978g00034 1003 Gene3D - 499 618 - -
Pral3978g00034 1003 SMART GluR_14 498 850 IPR001320 GO:0015276|GO:0016020
Pral3978g00034 1003 Pfam Bacterial extracellular solute-binding proteins, family 3 523 849 IPR001638 -
Pral3978g00034 1003 FunFam Glutamate receptor 498 619 - -
Pral3978g00034 1003 FunFam Glutamate receptor 187 342 - -
Pral3978g00034 1003 PIRSF IGluLR_plant 40 960 IPR017103 -
Pral3978g00034 1003 SUPERFAMILY Periplasmic binding protein-like II 475 850 - -
Pral3978g00034 1003 FunFam Glutamate receptor 619 749 - -
Pral3978g00034 1003 CDD GluR_Plant 498 848 - -
Pral3978g00034 1003 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 72 925 IPR015683 -
Pral3978g00034 1003 MobiDBLite consensus disorder prediction 928 962 - -
Pral3978g00034 1003 Gene3D - 397 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00034 Pral-Chr3978 237092 241184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00034 67 978 Ion Channels AT2G29120 50.327 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00034 K05387 - qsa:O6P43_019170 1197.19