Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00033 ATGACTGGTATTCCTGACGAGCAGCGAAGCCAGCTAGTGCGGAAGATGAAGAAGAAGAGGGATGCCCTGGTGTTCTATTGCTCTGTGATTCTGTGTTTGAAGCTGAGCGTCTCACAGAACAACACAACAGTGCCGGTGAAGGTGGGAGTTTTGCTTGATCTTTCCCACACAACGGCTAAGATCGGATTGAGCTCTATCAACATGTCCCTCTCTGACTTTTATGCCTCTCATTCTCATTACAGCACCAGGCTCCTCCTTCACGTCAGAGACTCCCACACAGATGTTATCACTGCATCATCTCAAGCTATAGATCTCACAAAAGGCGAGGAAGTGCAAGCCATAATCGGACCCCTTACGTCAATGGAAGCTAACTTTGTGATCAGTCTTGGAGACAAAGCTCATGTGCCCATCTTAACATTTTCGGCAACGACTCCTTCTCTTGCTTCCCTTCGGAGTCCATATTTCTTTCGACTCGCACAAAACGATTCATCTCAAGTGAACGCCATCGCTGCCATCGTACAAGCTTTTGGGTGGAGAAAAGCAGTGCCCATTTACGTAGACAACGAGTACGGGAAGGGGGTAATACCCTTTTTGACTAATGCTCTGCAACAAGCGTATGTTCAAATCCCATATCTCAGCGCCATCTCTCCTTCAGCCACAGATGAAGACATCAGAGGAGAGCTTTACAAGTTGATGACCATGCAAACCAGAGTGTTCGTTGTTCACATGTCCGCAAATCCTGGCATTCGTCTCTTCAGCATAGCTTATGAGATTGGCATGATGAACGAAGGCTATGTTTGGATCGTCACCGATGGTTTGGGTAACGAGATAAATTCCTTGGACTCCTCAGTGATAGATTCAATGCAAGGAGTACTGGGTGTGAGGACTTATGTTCCCAAAACAAAACGGCATGACGATTTTAAAGTTCGATGGAGAAGAAAGTTCGTGCGAGACAATCCTACCCTTGTTGATACGGATTTGAATATTTTTGGAAAATGGGCTTATGATGCTGCCACTGCATTAGCTATGGCTGTTGAGAAGGCTGGCACCAACAATCTCGGCTTTGATATGAGCAATGCTTCGGGTAAATTTTCTGATCTTGAAAAGTTGGGAGCTTCACAGAATGGGGAAAGGCTGCGTGGGGCATTATTAGATACTAGATTTAGGGGCATCAGTGGAGAGTTCAGTGTTATTGACGGGCAACTGCAAGCATCCACATTTGAGATAATCAACGTTAATGGGAATGGAGAAAGACGGGTAGGATTTTGGACACCAGAAAAAGGAATAACAAGGAACCTGAATTTCACAAGCGCAAGCACATATTCTACTTCCAGGAATAATTTAAAGCCTATCATATGGCCAGGAGATACATACTCTCTTCCAAAGGGTTGGGATAATCCTACAAATGAGAAAAAGATGAGGATAGGAGTTCCAGTGAAAAAGGGTTTTACTGAATTTGTGAAGCTATCACATAATCGTATCACCAATACAACAGATGTCGATGGATTCAGCATCGAAGTATTTAAGGAAGTGCTGAAAGTTTTGCCCTACGCAGTCCCTTACGAATTCATCCCATTTGCAAAACCCGATGGAGGACCTGCAGGAACATACGATGAGCTGATCAACCGAGTTTCTAATGGGAATCTTGATGCAGTTGTTGGGGATACGGCGATTACTGCCGACAGGTCAAATGATGTGGACTTCACTATGCCATACACAGAATCTGGAGGAACAATGATTGTTCTGTTAGTAGAAAATAAGCACAAGAGTCCGTGGGCATTCTTGAAGCCATTGACGTGGGATCTGTGGGTCACCACAACTATTTCGTTCATATTTGTTGCCTTCGTCGTATGGGTGCTTGAGCATCGAATAAACGATACGTTCCGAGGACCGCCCTCACATCAGATTGGCACCAGCTTATGGTTTTCATTCTCAATCTTGGTGTTTGCCCATCGGGAGAAAATAGTGAGCAACTGTTCTAGATTTGTGGTGACGATGTGGGTCTTCGTGGTTCTAATTTTGATCCAAAGCTACACGGCGAGCTTGACTTCCCTCTTAACGGTTAAACAGCTGCGTCCAAGCGTTACAGATGTGAATCAGTTGATCAAAAATAAGCTGAATGTGGGCTACTACACTGGTTCTTTTGTGCGTGGGATGTTAAAAGATATGGGATTTCAAGAATCCCAGCTCATTCCTTATCATTCCGCAGAACACTGTGACGAACTGTTTACATTGGGAACTGCCAAGGGTGGCATTGACGCTGCTTTTGACGAAATGCCCAATGTGAAGCTGTTTCTTGCAACTTACTGCTCCAAGTATACTTCCACAGTTCCGCCTTCTTTTAGAACTGACGGCTTTGGTTATGTGTTTCCTAAAGGGTCTCCTCTCGTAGCAGACATTTCAAGGGGAATCATAAATGTGACTCAGGGAGATAAAATGAAAACAATAGAGAACGCATGGTTCAAGAGAAGTCATTGTCCAGAGAAGGATGCTTCGGTTTCTTCCGCTCATCTAAGCGTCGATAGTTTCTGGGGCCTCTTCTTCATTGCTGGGGTTGCTGCAATTTCAGCTCTCCTCATATTTGCCGTCACATTCCTATACCAGCATAAGCATATCTTGCACCCCAATCCATCTGACTCCTCATCATCAATATGGAAACGAATCAGTGCGTTGCTTAAAGTGTTTGACGACAAAGACTTGAGCTCCCACACGTTCAGAAAAAGTGAACATCAAAGTTCACCAAATACTCACTGCCCACCAAGTCCGTCGAGTCAAACAGAATCAAACTTCTCGTTTTCGGTAGAACATGGAAACGTTAATCCATATGGAGATGAACCGCAGGATGACATGGAGATAAGCATGGTGCATAATTCCCCACCTTCACCCTCACCTGAAAGTAGTCCTTCAAATAACTGA 2916 0.4462 MTGIPDEQRSQLVRKMKKKRDALVFYCSVILCLKLSVSQNNTTVPVKVGVLLDLSHTTAKIGLSSINMSLSDFYASHSHYSTRLLLHVRDSHTDVITASSQAIDLTKGEEVQAIIGPLTSMEANFVISLGDKAHVPILTFSATTPSLASLRSPYFFRLAQNDSSQVNAIAAIVQAFGWRKAVPIYVDNEYGKGVIPFLTNALQQAYVQIPYLSAISPSATDEDIRGELYKLMTMQTRVFVVHMSANPGIRLFSIAYEIGMMNEGYVWIVTDGLGNEINSLDSSVIDSMQGVLGVRTYVPKTKRHDDFKVRWRRKFVRDNPTLVDTDLNIFGKWAYDAATALAMAVEKAGTNNLGFDMSNASGKFSDLEKLGASQNGERLRGALLDTRFRGISGEFSVIDGQLQASTFEIINVNGNGERRVGFWTPEKGITRNLNFTSASTYSTSRNNLKPIIWPGDTYSLPKGWDNPTNEKKMRIGVPVKKGFTEFVKLSHNRITNTTDVDGFSIEVFKEVLKVLPYAVPYEFIPFAKPDGGPAGTYDELINRVSNGNLDAVVGDTAITADRSNDVDFTMPYTESGGTMIVLLVENKHKSPWAFLKPLTWDLWVTTTISFIFVAFVVWVLEHRINDTFRGPPSHQIGTSLWFSFSILVFAHREKIVSNCSRFVVTMWVFVVLILIQSYTASLTSLLTVKQLRPSVTDVNQLIKNKLNVGYYTGSFVRGMLKDMGFQESQLIPYHSAEHCDELFTLGTAKGGIDAAFDEMPNVKLFLATYCSKYTSTVPPSFRTDGFGYVFPKGSPLVADISRGIINVTQGDKMKTIENAWFKRSHCPEKDASVSSAHLSVDSFWGLFFIAGVAAISALLIFAVTFLYQHKHILHPNPSDSSSSIWKRISALLKVFDDKDLSSHTFRKSEHQSSPNTHCPPSPSSQTESNFSFSVEHGNVNPYGDEPQDDMEISMVHNSPPSPSPESSPSNN 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00033 971 FunFam Glutamate receptor 472 591 - -
Pral3978g00033 971 CDD GluR_Plant 471 821 - -
Pral3978g00033 971 Gene3D - 748 828 - -
Pral3978g00033 971 MobiDBLite consensus disorder prediction 907 936 - -
Pral3978g00033 971 Pfam Receptor family ligand binding region 64 415 IPR001828 -
Pral3978g00033 971 SUPERFAMILY Periplasmic binding protein-like II 451 824 - -
Pral3978g00033 971 FunFam Glutamate receptor 591 721 - -
Pral3978g00033 971 SUPERFAMILY Periplasmic binding protein-like I 45 455 IPR028082 -
Pral3978g00033 971 PIRSF IGluLR_plant 16 958 IPR017103 -
Pral3978g00033 971 Gene3D - 592 720 - -
Pral3978g00033 971 FunFam Glutamate receptor 336 471 - -
Pral3978g00033 971 Gene3D - 476 591 - -
Pral3978g00033 971 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 908 IPR015683 -
Pral3978g00033 971 FunFam Glutamate receptor 167 325 - -
Pral3978g00033 971 Gene3D - 163 326 - -
Pral3978g00033 971 MobiDBLite consensus disorder prediction 903 971 - -
Pral3978g00033 971 SMART GluR_14 474 823 IPR001320 GO:0015276|GO:0016020
Pral3978g00033 971 Pfam Ligand-gated ion channel 823 853 IPR001320 GO:0015276|GO:0016020
Pral3978g00033 971 CDD PBP1_GABAb_receptor_plant 47 433 IPR044440 -
Pral3978g00033 971 Gene3D - 378 475 - -
Pral3978g00033 971 Pfam Bacterial extracellular solute-binding proteins, family 3 497 822 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00033 Pral-Chr3978 231944 236839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00033 17 922 Ion Channels AT2G29120 51.913 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00033 K05387 - qsa:O6P43_019170 1199.11