Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00031 ATGGTTTGCGAGATGGAGCATGACCTTATGGAGGACATGGACATAGAAGTCCTGCCTTCTATGTGGCCAGAAGATATTGGAACTGATGCTGGGAAACAGTTTAACATAGAGAAGCCAGGAAGTGACCAAGACATGTTGGAGGAGGTCACAATAGTGGAGGAGCCAACTATAGTAGATTTCAAACGTCTCATGGAGCTCACTAACTACACAGACAGAGGGTCATCTCAGCTGACCTATTTCATGAAATACCTGGAGTACAGGCAGGCTAATGCTGTGCGTCTCCTAAGAGAAGAACTCGACAACCTAAGCAAACAGAGACAGGAGGTTGAGCTGAGGAAGTTGAAGATATTGGAAGAGCACCGGTTTGAGGACATAAGATATGGGGATGACAAACGACCAGTTTCTATATTGGATGAGGTTTATGACATATGGCAAGATATACCTCGGAGGAAAAAAGACGTTGTTGTTCAGAATAAGGGTATTGAAATAGATGCCGAGTATGATACTGTAGTGTACTGGAAGCAGAGGGCCCTGCATCTGGAAAAACTGTTGGAAGCGAGTATACACAGAGAGCAGACACTTATGGAGAAGCTGGAAGAAAGCATAAAGAATCTTGAAAGGCAGTCCTCTCCTGTAGAAGAATTGTCTCAGATTCTGAAAAGAGCAGATAATTTCTTGCATTTTATTCTGCAGAATGCACCTGTTGTCATAGGCCACCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAACCATTTCCCAAGTTTGCAAGAGGAGGACATCATAGGAAGAACAGATGTGGAAATTTTCACGGGGTCTGGAGTCAGGGAATCTCAAGATTTTAAGAGAGAAGTTTTGGAAAAAGGATTGCCTGCGAAAAGGGAAATTACCTTTGAGACAGAACTATTTGGGTCAAAGACATTCTTAATTTATGTAGAACCTGTCTTTAGCAAGGCAGGGGAAACAATTGGGATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCACAAATTAGGGAAGAGATTGCAGTTCAGAAAGCAAAAGAGACTGAATTAAATAAGACCATCCACATTACAGAGGAGACCATGCGAGCAAAACAAATGCTAGCAACCATGTCCCATGAAATAAGATCTCCACTGTCGGGGGTTGTTAGCATGGCTGAAATTCTTTCTACTACAAAACTTGACAAGGAGCAGAGACAGCTCTTGGAAGTCATGCTTTCCTCAGGAGATTTGGTTCTTCAACTTATAAATGACATATTAGATCTTTCCAAGGTTGAGTCAGGAGCCATGAAGCTGGAAGCTACCAAATTCCGTCCAAGAGAGGTAGTAAAGCATGTTCTGCAGACTGCTGCAGTATCGCTGCAGAAAATATTAACCCTAGAAGGTCATGTGGCAGATGATGTACCTATTGAGGTCACTGGAGATGTTTTAAGGATTCGGCAAATTCTTACAAATCTCACAAGCAATGCAATCAAGTTCACCCATGAAGGTAAAGTTGGCATAAATCTCTACGTTGTAGCGGAGCCCAATTTTGCAAAATCGGGAGACAAGTCAAGCGAATCGGTGAGTGGATTGACAGAAGAGAGATACTTGTCAGCGTCACAAAATGGAAGTGATGAATGCAGATCTCCAGTTAAAAGCGAATGCTCAAGAAATGGGGATACAGAGGAGCAACCTCATTCAACTGAAACTACAGTGTGGATACGTTGTGATGTATACGACACTGGAATTGGAATACCAGAAAATGCAATTCCTACTCTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGCGGCACTGGGCTAGGACTAGCAATATGCAAACAACTGGTCGAATTAATGGGTGGTCGTCTAACAGTGTCAAGCAAGGAACATTGTGGTTCTACGTTTACATTCATACTCCCATACAAGGTTTCTATTGCTTGTGATCATTCAGATGACACCGACGAGCTCTCAGATAGGGCGAACGACGACGCTGCGTCGGATGATGCTACGCAAGGATTCTTCCAATTCCAACCACGTACGTTGGGCTCACTTTTCTCGTCCAGCGGATCTACCAGAGCCCCAAAATTGTTACCACATAAACTTGGGCTCACAATCCCTCATAACTTTAATGGGTTTTCGGAGACTTCTTACTCGTTCCCCTCTAACGACTTCACTTCAAATGGAACAACTTCAGTTGGAGACAGAATCCGAGTGACAGTACCAGACGCGCCAGAGATATCTGAATCAGGAAGTTCGATGACTCATAAGCCAGAAACAGAGAAGGAAAGTGTAGTTAGTAGAGACAAGCAGCGTCAAGGTAATACATTTGCTCAACTCCAGAATGGTATTGCAAGTAGAGAAATTGGGGTGGCAACGAAGTCAAGCAAAACCCAGCAATCAAGTGAGACGCAAGAGAAGGATAACAACAGAACTTCCCACTGTGTTACTAGCAGAAATAATAGTACACCAGCAGTGGCCAAACCCCCATTAGAGCCTAAGATCCTTCTAGTTGAAGATAACAACGTCAATGTTATAGTGGCACGCTCGATGATGAATCAGTTAGGTCACAGCATAGACGTGGTAAATAATGGAGCGGAAGCTGTGCGTGCAGTTCAGCGCAGGAGTTATGACCTCATTCTGATGGATGTGTGCATGCCAGTTATGAACGGTCTTGAAGCAACAAAATTGATTCGCTCTTTTGAGGAAACTGGCAATTGGGATGCTGCAACAAAAGCTGGAATAGAGTCAAGCTTTTCAACTTCAGATTTGCAGAAACCTGAATGTTGTACAAAGCGAATGCCCATTATTGCAATGACGGCAAATGCTTTGTCAGAGAGTGCGGAAGAGTGTTATGCAAATGGAATGGACTCATTTGTGTCTAAACCAGTGACATTCCAGAAATTGAAGGAGTGCCTTGAACAATTCCTACGGTGA 2958 0.4327 MVCEMEHDLMEDMDIEVLPSMWPEDIGTDAGKQFNIEKPGSDQDMLEEVTIVEEPTIVDFKRLMELTNYTDRGSSQLTYFMKYLEYRQANAVRLLREELDNLSKQRQEVELRKLKILEEHRFEDIRYGDDKRPVSILDEVYDIWQDIPRRKKDVVVQNKGIEIDAEYDTVVYWKQRALHLEKLLEASIHREQTLMEKLEESIKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFTGSGVRESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAQIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLEVMLSSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAVSLQKILTLEGHVADDVPIEVTGDVLRIRQILTNLTSNAIKFTHEGKVGINLYVVAEPNFAKSGDKSSESVSGLTEERYLSASQNGSDECRSPVKSECSRNGDTEEQPHSTETTVWIRCDVYDTGIGIPENAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSIACDHSDDTDELSDRANDDAASDDATQGFFQFQPRTLGSLFSSSGSTRAPKLLPHKLGLTIPHNFNGFSETSYSFPSNDFTSNGTTSVGDRIRVTVPDAPEISESGSSMTHKPETEKESVVSRDKQRQGNTFAQLQNGIASREIGVATKSSKTQQSSETQEKDNNRTSHCVTSRNNSTPAVAKPPLEPKILLVEDNNVNVIVARSMMNQLGHSIDVVNNGAEAVRAVQRRSYDLILMDVCMPVMNGLEATKLIRSFEETGNWDAATKAGIESSFSTSDLQKPECCTKRMPIIAMTANALSESAEECYANGMDSFVSKPVTFQKLKECLEQFLR 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00031 985 ProSiteProfiles Response regulatory domain profile. 841 984 IPR001789 GO:0000160
Pral3978g00031 985 MobiDBLite consensus disorder prediction 552 566 - -
Pral3978g00031 985 Coils Coil 92 119 - -
Pral3978g00031 985 PRINTS Bacterial sensor protein C-terminal signature 611 629 IPR004358 GO:0016310|GO:0016772
Pral3978g00031 985 PRINTS Bacterial sensor protein C-terminal signature 576 590 IPR004358 GO:0016310|GO:0016772
Pral3978g00031 985 PRINTS Bacterial sensor protein C-terminal signature 635 648 IPR004358 GO:0016310|GO:0016772
Pral3978g00031 985 MobiDBLite consensus disorder prediction 777 813 - -
Pral3978g00031 985 Gene3D - 838 985 - -
Pral3978g00031 985 FunFam Histidine kinase 5 213 348 - -
Pral3978g00031 985 Pfam Response regulator receiver domain 842 911 IPR001789 GO:0000160
Pral3978g00031 985 FunFam Putative histidine kinase 5 359 436 - -
Pral3978g00031 985 MobiDBLite consensus disorder prediction 762 776 - -
Pral3978g00031 985 SUPERFAMILY CheY-like 840 985 IPR011006 -
Pral3978g00031 985 ProSiteProfiles Histidine kinase domain profile. 378 651 IPR005467 -
Pral3978g00031 985 Coils Coil 188 215 - -
Pral3978g00031 985 CDD HATPase_EvgS-ArcB-TorS-like 487 648 - -
Pral3978g00031 985 Gene3D - 437 654 IPR036890 -
Pral3978g00031 985 FunFam Histidine kinase 5 834 985 - -
Pral3978g00031 985 MobiDBLite consensus disorder prediction 521 569 - -
Pral3978g00031 985 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Pral3978g00031 985 Gene3D PAS domain 213 348 - -
Pral3978g00031 985 SMART HKATPase_4 482 651 IPR003594 -
Pral3978g00031 985 MobiDBLite consensus disorder prediction 749 834 - -
Pral3978g00031 985 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 649 IPR003594 -
Pral3978g00031 985 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Pral3978g00031 985 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 12 984 - -
Pral3978g00031 985 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 649 IPR036890 -
Pral3978g00031 985 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Pral3978g00031 985 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Pral3978g00031 985 CDD REC_hyHK_CKI1_RcsC-like 842 980 - -
Pral3978g00031 985 Gene3D - 358 436 - -
Pral3978g00031 985 SMART REC_2 840 980 IPR001789 GO:0000160
Pral3978g00031 985 MobiDBLite consensus disorder prediction 522 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00031 Pral-Chr3978 223036 229348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00031 1 984 Histidine Kinase Gene Family AT5G10720 59.278 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral3978g00031 HATPase_c 3.9e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00031 - - gmx:100819520 1459.12