Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00025 ATGGCTTCCACAATACCTAATGATTCCGACCACACTCCGAGAAGTACTATCGACTCTTGCTCATCCAGTAAGTACAAAGGCGTCAGAAAGCGAAAATGGGGCAAATGGGTGTCTGAGATCAGGCTTCCCAACAGCCGCGAGCGCATTTGGCTGGGCTCCTATGACTCGGCGGAGAAGGCAGCTCGAGCCTTCGACGCCGCCCTGTACTGCCTGCGCGGTCGCCACGCCAATTTCAATTTCCCGGACACGCCTTTGGAGCTGGAGATCAGTGTCTCCGGCGACCATCACCAATCTCGTTCTGCTCAAGAAATCCAGGAGCTTGCTGCTAGGTTTGCCAACGAGTACCAGCAGGAGCCACCGATGGTTCAGCAATCTTCGGAAGTAGCGGCTCCTTCCTCCTGTGAATCTGATGGGGTCACTGAGAGTGGCGATCCTGTGGAGGTGGACAACGGGTTCGGGGACACAAGGGGCATTAACGATTGGTCGTTTTTGAAGTCACTGGATGAGACAGGCTCCGCCAATTATAATGGTTTCTACTCTGGATTCGACAAGATGCACTCTGGTGAGTTGTTATTTCCCACATCACCACCTCCATTCATCGATCATGTTAGTGACAATGGGGACGCAATGGAATGTGATGACGCTTTTTCCCAACAATCATTGTTCCTTTGGAACTTTTGA 681 0.5198 MASTIPNDSDHTPRSTIDSCSSSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALYCLRGRHANFNFPDTPLELEISVSGDHHQSRSAQEIQELAARFANEYQQEPPMVQQSSEVAAPSSCESDGVTESGDPVEVDNGFGDTRGINDWSFLKSLDETGSANYNGFYSGFDKMHSGELLFPTSPPPFIDHVSDNGDAMECDDAFSQQSLFLWNF 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00025 226 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Pral3978g00025 226 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Pral3978g00025 226 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Pral3978g00025 226 MobiDBLite consensus disorder prediction 1 23 - -
Pral3978g00025 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 148 - -
Pral3978g00025 226 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Pral3978g00025 226 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00025 Pral-Chr3978 166927 167620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00025 19 226 AP2-EREBP Transcription Factor Family AT1G19210 46.047 1.56e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3978g00025 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00025 - - pcin:129301731 309.301