Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00016 ATGGCATTTCGTTTGGTACTTGTTCTTCTGGCTCTTTTCATTTGTTTGAACTTCAACTCGGTGGATTCAGACGATGGAGCAACATTATTGGAGATAAAGAAGTCGTTCAGGGATGTGGATAATGTTCTATGTGACTGGACAGACTCTTCTTCTTCCGATTATTGTGTCTGGAGGGGGATCACATGCGATAATGTCACCTTTAATGTGGTTGCACTAAACCTCTCAAGTTTCAATCTGGACGGTGAAATCTCACCTGCAATAGGGGGCCTTAAGGACTTGGTCTCTATCGACCTGAGGGGGAACCGACTATCTGGCCAGATACCCGATGAGATTGGTGACTGTTCCTCTTTGAAGAGCTTGGACTTGTCATTTAATGATATACGGGGAGACATACCATTTTCAATTTCAAAGTTGAAACAACTGGAAAATCTAATTTTGAAAAACAACCAGTTAATAGGACCAATTCCTTCTACATTGTCTCAGATTCCCAACTTGAAGATTCTGGACCTGGCTCAAAATAATCTTAGCGGTGAAATACCAAGGCTTATATACTGGAACGAAGTCTTGCAATATCTTGGCTTGCGAGGGAACAATTTAGGGGGTTCACTCTCTCCTGACATGTGCCAATTAACTGGACTATGGTATTTTGATGTGAGGAACAATAGCTTGACTGGCGGCATTCCTGAAAGTATAGGCAACTGTACTGCCTTCCAGGTCTTGGATTTATCCTACAACCAGCTGACTGGAAAGATACCGTTCAATATTGGGTTTCTTCAAGTAGCAACATTGTCACTGCAAGGCAATAAACTCTCTGGACCTATTCCATCGGTGATTGGACTGATGCAAGCACTTGCTGTCTTAGATTTGAGTTGTAACAAGCTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACATACACTGAAAAATTGTATTTGCATGGGAATAAACTGTCTGGCCCCATTCCCCCAGAGCTCGGAAACATGACAAAGCTTCACTATTTGGAATTGAATGATAACCATTTGAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATCTTTTTGATTTAAATGTCGCTAACAACAACCTTGAGGGGCCAATTCCTGATAATATTAGCTCATGCGAAAACCTCAACAGCCTCAATGTGCATGGAAACAAGTTAAATGGAACAATCCCACAAACTTTTCAGAGCTTGGAGAGTATGACGTATCTGAATCTCTCCTCCAATAAGCTCCGAGGCCCCATTCCAATTGAGCTGTCAAGGATTGGTAATTTGGATACATTGGATATTTCAAATAATAATATAAGTGGCTCCATTCCTTCTTCCCTTGGTGATTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAATCACCTAACTGGGTTTATTCCGGCAGAGTTTGGTAATTTAAGAAGTGTTATGGATATAGATCTTTCAAATAACCAGCTTGGCTTGATTCCTGAAGAACTTAGTCAGCTGCAGAACATGATATCCCTGAGGCTGGAAAACAACAATCTATCCGGGGATGTGACTTCTCTTATAAATTGCCTTAGCCTTTCTTTACTCAATGTGTCCTATAACAACCTAGTTGGTGTAATTCCCACAAGCAAATTCTCCAGGTTTTCTCCAGACAGTTTCATTGGAAACTCTGGTCTCTGTGGCTATTGGATGACTTCATCTTGTCATAGATCTCATCCCACGGAGAGAGTTACGTTATCTAAGGCAGCCATCCTAGGAATTGCTCTTGGTGCCCTTGTGATTCTTCTTATGATATTACTAGCAGCATGTCGGCCATACAATCCATCCCCATTTCCAGATGGATCACTTGACAAGCCAGTTAATTATTCGCCACCAAAGCTAGTGATTCTTCATATGAATATGGCCCTTCACGTTTATGAGGATATTATGAGGATGACTGAAAATCTGAGTGAGAAGTACATCATTGGATACGGTGCATCAAGCACAGTATATAAATGCGTCCTTAAGAACTGCAAGCCAGTGGCTATCAAGAGGCTCTATACTCACTATCCCCAAAGCTTGAAAGAATTTGAGACAGAACTTGGGACGGTTGGTAGCATCAAGCACCGAAACCTGGTTAGTCTCCAAGGCTACTCCTTGTCCCCTTATGGGAACCTTCTCTTCTATGACTACATGGAAAATGGCAGTCTATGGGACCTTCTCCATGGAGCTTCTAAAAAGAAAAAGCTTGACTGGGACCTTCGTTTGAAAATAGCACTAGGAGCAGCGCAAGGACTTGCTTATCTACACCATGATTGTTGCCCCCGGATCATTCACAGGGATGTGAAATCATCTAATATTCTGTTGGACAAGGACTTCGAGGCCCATCTCACTGACTTTGGCATTGCTAAAAGTCTATGCCCCTCCAAGTCCTACACTTCGACTTACATAATGGGCACAATCGGTTATATAGACCCTGAATATGCTCGAACTTCACGTCTCACTGAGAAGTCTGATGTTTATAGTTTTGGCATTGTTTTGCTTGAGTTGCTTACTGGCAGGAAAGCTGTGGACAATGAATCCAATCTCCATCACCTGATTTTGTCAAAGACGGCAAACAATGCTGTGATGGAGACGGTTGCTCCTGATATTACTGCCTCATGTAAGGACCTGGGAGCAGTAAAGAAGGTATTTCAGCTAGCCCTTTTGTGCACAAAGAGACAGCCGGTTGATAGGCCGACAATGCACGAGGTGACGCGCGTGCTGGGAAGCCTTGTACCACCCACCTCCCCACCGAAACAAGCAGCCCCACCTCCTGCAGCCTCTGCTCTGCTTCCATCTGCGAAGGTGCCATCTTGCTATATGGATGAGTATGCAAATCTGAAGGCTCCACACTTGGTGAACTGCCCGTCCATGAGCACCTCTGATGCCCAGCTCTTCCTCAAATTTGGGGAGGTAATTTCTCAGAACAGTGAATGA 2946 0.4352 MAFRLVLVLLALFICLNFNSVDSDDGATLLEIKKSFRDVDNVLCDWTDSSSSDYCVWRGITCDNVTFNVVALNLSSFNLDGEISPAIGGLKDLVSIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNDIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLGGSLSPDMCQLTGLWYFDVRNNSLTGGIPESIGNCTAFQVLDLSYNQLTGKIPFNIGFLQVATLSLQGNKLSGPIPSVIGLMQALAVLDLSCNKLSGPIPPILGNLTYTEKLYLHGNKLSGPIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPDNISSCENLNSLNVHGNKLNGTIPQTFQSLESMTYLNLSSNKLRGPIPIELSRIGNLDTLDISNNNISGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLXGLIPEELSQLQNMISLRLENNNLSGDVTSLINCLSLSLLNVSYNNLVGVIPTSNXFSRFSPDSFIGNSGLCGYWMTSSCHRSHPTERVTLSKAAILGIALGALVILLMILLAACRPYNPSPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRLYTHYPQSLKEFETELGTVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGASKKKKLDWDLRLKIALGAAQGLAYLHHDCCPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCPSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHHLILSKTANNAVMETVAPDITASCKDLGAVKKVFQLALLCTKRQPVDRPTMHEVTRVLGSLVPPTSPPKQAAPPPAASALLPSAKVPSCYMDEYANLKAPHLVNCPSMSTSDAQLFLKFGEVISQNSE 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00016 983 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Pral3978g00016 983 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3978g00016 983 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Pral3978g00016 983 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Pral3978g00016 983 ProSiteProfiles Leucine-rich repeat profile. 427 450 IPR001611 GO:0005515
Pral3978g00016 983 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524
Pral3978g00016 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 316 913 - -
Pral3978g00016 983 ProSiteProfiles Protein kinase domain profile. 647 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3978g00016 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Pral3978g00016 983 SUPERFAMILY L domain-like 23 298 - -
Pral3978g00016 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Pral3978g00016 983 Gene3D Transferase(Phosphotransferase) domain 1 723 921 - -
Pral3978g00016 983 SUPERFAMILY Protein kinase-like (PK-like) 624 913 IPR011009 -
Pral3978g00016 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Pral3978g00016 983 Gene3D Ribonuclease Inhibitor 187 296 IPR032675 -
Pral3978g00016 983 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Pral3978g00016 983 Gene3D Phosphorylase Kinase; domain 1 620 722 - -
Pral3978g00016 983 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Pral3978g00016 983 Pfam Leucine Rich repeat 114 130 IPR001611 GO:0005515
Pral3978g00016 983 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Pral3978g00016 983 SMART serkin_6 647 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3978g00016 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 722 - -
Pral3978g00016 983 Gene3D Ribonuclease Inhibitor 297 569 IPR032675 -
Pral3978g00016 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Pral3978g00016 983 SUPERFAMILY L domain-like 258 546 - -
Pral3978g00016 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 723 924 - -
Pral3978g00016 983 SMART LRR_typ_2 473 497 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 90 114 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 210 234 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 449 472 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 281 305 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 162 186 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 329 353 IPR003591 -
Pral3978g00016 983 SMART LRR_typ_2 401 425 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00016 Pral-Chr3978 104133 112495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00016 92 917 Receptor kinase-like Gene Family AT5G07180 68.924 0.0 1145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Pral3978g00016 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00016 K20718 - gmx:100782307 1656.34