Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00015 ATGACGGCTCATCTACTTAGACACTCTTTCTCTCCTCAACCTGGGATCTGTGTCAGTGATAGAAGAAACCGCGATGTCCGCGGAGTTGACTTCATTTCTCGACTGCCAGTGGAGCGACATCGCAGCTTCAGACGCCGGAGCATTCTCCCGCCGCATACAGGTCCAAAATTTGTCCTATTCAGCTCCCTTGAAACTAGAATTGACTCCACCAAAACAACATTGCAAGCGCCGAAAAAGAGCAAGGATTCGCCCGTTTTATTAGATGTCACTGGAATGATGTGTGGAGCTTGCGTCTCACGAGTTAAAAACATTTTGTCTGCCGATGAGCGAGTGGACTCAGTTGTGGTCAACATGTTGACTGAGACCGCCGCCGTTAAGTTGAAAAAACTCGACGTAGCACCGGCTTCAGTTCTGGAGAACGATTATCCTGAAATAGTAGCCGAGGCCCTTGCTGGTAGACTGACTGAATGTGGTTTTCCCACAAAACGCAGGGCGTCGGGTACAGGAATGGCAGAAAATGTTCGGAAATGGAAGGATTTAGCGAAGAAGAAGCAGGAACTGCTGGCGAAGAGTCGGAACCGTGTTGCCCTTGCTTGGACTTTGGTGGCGTTGTGCTGTGGATCTCATGCTTCGCACATTTTACATTCTTTAGGAATTCACATTGCTCATGGACCTGTATGGGAAGCTCTTCATAACTCATATGTCAAAGGTGGTGTAGCTTTGGCAGCTCTGTTGGGACCAGGTCGAGAATTACTGGTCGATGGCCTACGGGCATTTACGAAGGGATCACCGAATATGAACTCTCTTGTGGGATTCGGTTCTATTGCTGCCTTCATTATCAGTTCGATCTCACTACTTAGTCCTGGGCTGGCATGGGATGCATCATTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTACTTCTAGGACGTTCCTTGGAAGAAAAGGCGAGGATTCAGGCATCTAGTGATATGAATGAACTTCTCTCACTGGTTTCAACTCAATCAAGACTTGTGATTACTTCCTCAGAAAGTGCTCCATCTGCAGCCAGTGTGCTTTGCTCTGATGCGATCTGTGTTGAAGTCCCAACTGACAATATTCGAGTTGGTGATTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGAGTCATTTCTGGAAGAAGTGTAGTGGATGAATCCATGCTTACAGGAGAATCACTTCCTATGTATAAAGAAGAAGGCTTCACAGTTTCAGCGGGAACTATAAATTGGGATGGCCCTTTAAGGATTGAAGCTTCTTCAACCGGCTCCAACACAATGATATCCAAAATTGTCCGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCTGGCCCGTTTGTATACAGTGTTATGACTCTATCAGCAGCAACATTTGCATTTTGGTACTTAATTGGGTCACATGTTTTTCCAGATGTTTTACTTAATGATATTGCGGGCCCAGAAGGAGATCCTTTGCTTTTGAGCTTGAAACTTTCTGTAGATGTCTTGGTTGTATCTTGCCCTTGTGCACTGGGCCTTGCCACACCCACCGCAATCCTAGTTGGCACCTCACAGGGTGCAAGAAAAGGACTTCTCATTAGAGGTGGAGATGTGCTGGAACGCTTAGCTAGTATAAACCATGTTGCTCTAGACAAGACAGGAACCATCACCAGAGGAAAACCAGTTGTCTCTGCTGTGGGCTCTTTTAATTATGAGGAATCAGAAATTCTTCGGATTGCTGCTGCAGTGGAGAAAACAGCATCTCATCCAATAGCAAAGGCTATTATCAATAAAGCTGAGTCATTAGAATTGGTCCTTCCAGTCACAAAAGGGCAGTTAGTTGAGCCGGGTTTTGGAACCTTGGCAGAAACTGATGGACGGTTGGTTGCAGTTGGTTCCTTAGAATGGGTACATGAACGTTTCCAGACAAGAATGAACTCAACTGATTTGAAAAATCTGGAGCATGTTTTGATGAATAAATCATTAAATGATATGCCTTCAAACTATTCAAAAACCATTGTTTATGTCGGACGGGAAGGAGAAGGCATCATTGGTGCCATTGCTATATCTGACATTTTACGTGATGATGCTAAATCTACGGTAATGAGACTCCAGCAGAAGGGTATTAAAACAGTCCTCTTATCGGGGGACAGGGAAGAGGCAGTGGCAACAATTGCAGAGACAGTTGGGATAGAAAGTAGCCTAGTCAAAGCATCACTGTCCCCACAGCAGAAATCTAAATTCATTTCATCTCTCAAAGCTGCTGGGCATTGTGTTGCAATGGTAGGTGATGGGATAAATGATGCACCCTCGTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAAAATGCTGCATCAGATGCTGCATCTATCATACTTATTGGGAATAAAATTTCGCAAGTTGTAGATGCCCTAGAACTCGCACAGGCAACCATGGCAAAAGTGTACCAGAATTTGTCATGGGCAGTCGCTTATAATGTTGTTGCCATCCCCATTGCTGCTGGTGCTTTACTTCCCCAATTTGATTTTGCTATGACACCTTCACTTTCAGGGGGAATGATGGCTTTAAGCTCCATTTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGAGTTCAAAAACAAGCAATAG 2688 0.4509 MTAHLLRHSFSPQPGICVSDRRNRDVRGVDFISRLPVERHRSFRRRSILPPHTGPKFVLFSSLETRIDSTKTTLQAPKKSKDSPVLLDVTGMMCGACVSRVKNILSADERVDSVVVNMLTETAAVKLKKLDVAPASVLENDYPEIVAEALAGRLTECGFPTKRRASGTGMAENVRKWKDLAKKKQELLAKSRNRVALAWTLVALCCGSHASHILHSLGIHIAHGPVWEALHNSYVKGGVALAALLGPGRELLVDGLRAFTKGSPNMNSLVGFGSIAAFIISSISLLSPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLVSTQSRLVITSSESAPSAASVLCSDAICVEVPTDNIRVGDSVLVLPGETIPIDGRVISGRSVVDESMLTGESLPMYKEEGFTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYLIGSHVFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSQGARKGLLIRGGDVLERLASINHVALDKTGTITRGKPVVSAVGSFNYEESEILRIAAAVEKTASHPIAKAIINKAESLELVLPVTKGQLVEPGFGTLAETDGRLVAVGSLEWVHERFQTRMNSTDLKNLEHVLMNKSLNDMPSNYSKTIVYVGREGEGIIGAIAISDILRDDAKSTVMRLQQKGIKTVLLSGDREEAVATIAETVGIESSLVKASLSPQQKSKFISSLKAAGHCVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILIGNKISQVVDALELAQATMAKVYQNLSWAVAYNVVAIPIAAGALLPQFDFAMTPSLSGGMMALSSIFVVGNSLLLQLHEFKNKQ 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00015 895 CDD HMA 87 160 IPR006121 GO:0046872
Pral3978g00015 895 Gene3D - 573 706 IPR023299 GO:0000166
Pral3978g00015 895 Pfam haloacid dehalogenase-like hydrolase 558 789 - -
Pral3978g00015 895 SFLD Haloacid Dehalogenase 545 828 - -
Pral3978g00015 895 SUPERFAMILY HMA, heavy metal-associated domain 85 134 IPR036163 GO:0046872
Pral3978g00015 895 SUPERFAMILY Calcium ATPase, transduction domain A 355 445 IPR008250 -
Pral3978g00015 895 NCBIfam heavy metal translocating P-type ATPase 266 886 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pral3978g00015 895 Gene3D - 318 449 - -
Pral3978g00015 895 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 564 659 IPR023299 GO:0000166
Pral3978g00015 895 PRINTS P-type cation-transporting ATPase superfamily signature 395 409 - -
Pral3978g00015 895 PRINTS P-type cation-transporting ATPase superfamily signature 720 730 - -
Pral3978g00015 895 PRINTS P-type cation-transporting ATPase superfamily signature 775 794 - -
Pral3978g00015 895 PRINTS P-type cation-transporting ATPase superfamily signature 562 576 - -
Pral3978g00015 895 PRINTS P-type cation-transporting ATPase superfamily signature 698 709 - -
Pral3978g00015 895 NCBIfam HAD-IC family P-type ATPase 346 867 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral3978g00015 895 Gene3D - 553 826 IPR023214 -
Pral3978g00015 895 FunFam Copper-transporting ATPase PAA2, chloroplastic 573 706 - -
Pral3978g00015 895 Pfam Heavy-metal-associated domain 87 132 IPR006121 GO:0046872
Pral3978g00015 895 ProSitePatterns E1-E2 ATPases phosphorylation site. 564 570 IPR018303 -
Pral3978g00015 895 ProSiteProfiles Heavy-metal-associated domain profile. 83 162 IPR006121 GO:0046872
Pral3978g00015 895 SUPERFAMILY HAD-like 561 883 IPR036412 -
Pral3978g00015 895 Gene3D - 78 165 - -
Pral3978g00015 895 PANTHER ATP7, ISOFORM B 74 888 - -
Pral3978g00015 895 Pfam E1-E2 ATPase 346 542 - -
Pral3978g00015 895 SFLD p-type atpase 545 828 IPR044492 -
Pral3978g00015 895 FunFam Copper-transporting ATPase 1, putative 318 449 - -
Pral3978g00015 895 SUPERFAMILY Calcium ATPase, transmembrane domain M 278 556 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00015 Pral-Chr3978 90770 100195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00015 248 894 Primary Pumps ATPases AT1G63440 35.250 8.46e-113 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00015 K17686 - gmx:100127402 1332.39