Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00005 ATGCACACTCTCTTTCTGACAGCCTCGTATAAATTGAAACTAGCTACTATCTCAGAATACGAAGGCTCATCAGTCTGTGACAGAATAAGAGAGTGGGGAGTGATAATGGGGAGGATTCGTTCGCGCAGTAATGAAGGGCAGAAAAGGGAGGCTTGGACTGCTCAAGAAGACAGAATACTGGCTGCTTATATCAGGGCCCATGGCGAAGGCAAATGGAAGAACATCCCCAAACAAACTGGTCTCAGGAGATGTGGAAAATCGTGTAGGCTTCGGTGGATGAATTACCTAAGACCAGACATCAAAAGAGGTAATATTACGGAAGACGAAGAAGACCTCATTCTCAGGCTCCACAAGCTCTTGGGCAACAGATGGTCACTGATAGCAGGACGACTCCCGGGGCGAACAGACAATGAAATCAAAAACTACTGGAATACTAACTTAGCCAAGAAGGAGCAGGAGAAGCGAGCAAATGATATATCTCAAGATGGGGAGAAGGAGATTGCAGAGGCAAGGGTGTACCAGGGGGCTTTGGAGAGACTTCCTCCAGAGCCTAGGGAGATGGAGCCCAAGACGGAGTCCCCTGTTGCTATTGATGGTCAATCATATTCGCCAGGGGAAGAAAACGGGGATGCGGCTTTGATGGATTTTGATTTCAAGGACGTGGAGTTCTTGGAGTTTCTAGACTTGGATTTTACTGGACTTGCAGATTTTGACATGTTAATTAACATGGACGATTCCGAACAAGAAGCAGGGCAGAGTGATTCTCAGTCATTTTCATTTTCTGCTGAAACAAACGCTGCGCCGGGGAACCAGAAGGTCACCTATTGGTGA 831 0.4705 MHTLFLTASYKLKLATISEYEGSSVCDRIREWGVIMGRIRSRSNEGQKREAWTAQEDRILAAYIRAHGEGKWKNIPKQTGLRRCGKSCRLRWMNYLRPDIKRGNITEDEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLAKKEQEKRANDISQDGEKEIAEARVYQGALERLPPEPREMEPKTESPVAIDGQSYSPGEENGDAALMDFDFKDVEFLEFLDLDFTGLADFDMLINMDDSEQEAGQSDSQSFSFSAETNAAPGNQKVTYW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00005 276 FunFam MYB-related transcription factor 48 101 - -
Pral3978g00005 276 Gene3D - 39 102 - -
Pral3978g00005 276 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Pral3978g00005 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Pral3978g00005 276 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Pral3978g00005 276 CDD SANT 51 96 IPR001005 -
Pral3978g00005 276 Gene3D - 106 172 - -
Pral3978g00005 276 SMART sant 48 98 IPR001005 -
Pral3978g00005 276 SMART sant 101 149 IPR001005 -
Pral3978g00005 276 MobiDBLite consensus disorder prediction 181 208 - -
Pral3978g00005 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 36 167 - -
Pral3978g00005 276 MobiDBLite consensus disorder prediction 246 276 - -
Pral3978g00005 276 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Pral3978g00005 276 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Pral3978g00005 276 SUPERFAMILY Homeodomain-like 47 143 IPR009057 -
Pral3978g00005 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Pral3978g00005 276 CDD SANT 106 147 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00005 Pral-Chr3978 37211 38595 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00005 46 258 MYB Transcription Factor Family AT3G13540 45.494 6.33e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3978g00005 Myb_DNA-binding 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00005 K09422 - qsu:112011852 219.164