Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00004 ATGGGGAGGAGTCCGTGTTGCTCGAAGGAAGGACTGAACAGAGGAGCCTGGACTGCCTTTGAGGACAAGCTACTCAGCTCTTACGTGCAAGCCCACGGAGAAGGCAAATGGCGAAACCTGCCCCACCGAGCTGGCTTGAAAAGGTGTGGCAAAAGCTGCAGGCTTCGGTGGTTAAACTATCTCCGCCCTAACATTAAGCGAGGCAACATCACTCGTGATGAAGAAGATCTCATTCTCAGGCTCCATAAACTTCTTGGCAACAGATGGTCTCTCATAGCTGGGCGACTTCCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACTACTCTGGCAAAGAAGGTCAGACCTTTGGAATCATATCCACACCGCAAATCAACAACAGGCAAGGAATTAGCTGAGTTGGAGCAGGTCACTCCAGTTGATCCTCAGCCACAACCACAGTTAATTCAAACCAAGCCCGCTCGGTTTAAGAACCTAGTTATCCTACCACCCCACCATTCAAACGAAAACTCCACCATCAACCCTTCGTCTTCAAGCCCGAAAGAGGTCGATGAATTAGCCGCCATAGCCACGTATCAATTTGAGGAGGTTTCACGTTCTCCAAACCCTCGACTTAATGCAGACGAAGATGGGGTTCGTGAAAATCATAATTCCGATGTGAACATGTGGAGCTGCGGAAGCTATTATCAGTTTGCCCCGAGTGCAGAAAATTTGTACGGAGACGCCGGGATGTTTAACCTTGACCAGCCCCGATCCGTCGACGAACTTGTGGTCAGCGGGTGGGCCACGACGACGGGTGGCTTCGATGTCCACGAGAATAATGGCGCCATGGATTTGGAATCATTGGCTCACCTGCTCGACTCTGGGGATTGGCCCTGA 885 0.5073 MGRSPCCSKEGLNRGAWTAFEDKLLSSYVQAHGEGKWRNLPHRAGLKRCGKSCRLRWLNYLRPNIKRGNITRDEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKVRPLESYPHRKSTTGKELAELEQVTPVDPQPQPQLIQTKPARFKNLVILPPHHSNENSTINPSSSSPKEVDELAAIATYQFEEVSRSPNPRLNADEDGVRENHNSDVNMWSCGSYYQFAPSAENLYGDAGMFNLDQPRSVDELVVSGWATTTGGFDVHENNGAMDLESLAHLLDSGDWP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00004 294 Gene3D - 14 66 - -
Pral3978g00004 294 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
Pral3978g00004 294 CDD SANT 16 61 IPR001005 -
Pral3978g00004 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral3978g00004 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral3978g00004 294 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral3978g00004 294 SMART sant 13 63 IPR001005 -
Pral3978g00004 294 SMART sant 66 114 IPR001005 -
Pral3978g00004 294 Gene3D - 70 137 - -
Pral3978g00004 294 CDD SANT 71 112 IPR001005 -
Pral3978g00004 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral3978g00004 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral3978g00004 294 FunFam MYB-related transcription factor 13 66 - -
Pral3978g00004 294 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral3978g00004 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00004 Pral-Chr3978 29277 30910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00004 1 187 MYB Transcription Factor Family AT4G09460 51.852 1.66e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3978g00004 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00004 K09422 - tcc:18588141 261.536