Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00003 ATGAGGAGGAGTCCAAGTCGCTCTGGGGAAGTTGGGGGACTGAAAAGAGGAGCATGGACTGCTCAAGAGGACAAGATGCTCACTTCTTACATTGTGGCCCACGGCGAAGGCAAGTGGACCCACGTCCCTCTAAGAGCTGGCTTGAAAAGGAGTGGCAAAAGCTGCAGGCTTCGATGGTTGAACTATCTCAGGCCTGATATCAAGAGAGGTAACATCACCCAAGATGAAGAAGACCTCATTATTAGACTTCATAAACTTCTTGGCAACAGATGGTCTCTTATAGCCGGAAGGATCCCTGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACTACTTTGGCAAAGAAGCTTAGAACACAATCAGGCGCGACGTCGTCTGAACAACATCCATCCAGCAAATCAAGCGAATCTAATGATCTCGCTCGACCACAAGTAATCCAAACGAAGGCCGCAAGATGCAAAAACGTGATTTTGGATCGTCCCCCTAATTATGCTGAGGAAACGTCCACCGCCAACTCTCTAGATTCCAACCAGTTAGGGTTTGACGAAGCTCACCAAGCTCCCCACTTCACGAACCAGTTTCCGCAGGTTGTAAATGAATGTCAGAATTCAGATGTGAACTCGTTGGGTCGTGAACGGAATGATGAATTTCAAGATGAACTCAGTACAGGAGATTTTTTCAGAGAGTTTAACCTCGACAATAGCATGGCCATGACCATGGCTGCTCAGGCAGAGGGGTTCTCATCACCTATCGGCGAACTTGTTAATTGTGGGACAACTGACGGATTCAAGAGCATTGGGAACATGGATCTGGATTTGATGACACTCATGTTGGATTCTGGCTCTTGGGATTGGTCCTAA 864 0.4722 MRRSPSRSGEVGGLKRGAWTAQEDKMLTSYIVAHGEGKWTHVPLRAGLKRSGKSCRLRWLNYLRPDIKRGNITQDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNYWNTTLAKKLRTQSGATSSEQHPSSKSSESNDLARPQVIQTKAARCKNVILDRPPNYAEETSTANSLDSNQLGFDEAHQAPHFTNQFPQVVNECQNSDVNSLGRERNDEFQDELSTGDFFREFNLDNSMAMTMAAQAEGFSSPIGELVNCGTTDGFKSIGNMDLDLMTLMLDSGSWDWS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00003 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral3978g00003 287 Gene3D - 16 68 - -
Pral3978g00003 287 FunFam Transcription factor TT2 72 142 - -
Pral3978g00003 287 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pral3978g00003 287 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Pral3978g00003 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Pral3978g00003 287 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 197 - -
Pral3978g00003 287 Gene3D - 71 144 - -
Pral3978g00003 287 CDD SANT 73 114 IPR001005 -
Pral3978g00003 287 SMART sant 15 65 IPR001005 -
Pral3978g00003 287 SMART sant 68 116 IPR001005 -
Pral3978g00003 287 MobiDBLite consensus disorder prediction 120 143 - -
Pral3978g00003 287 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pral3978g00003 287 FunFam MYB-related transcription factor 15 68 - -
Pral3978g00003 287 CDD SANT 18 63 IPR001005 -
Pral3978g00003 287 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pral3978g00003 287 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00003 Pral-Chr3978 15012 16210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00003 13 145 MYB Transcription Factor Family AT3G13540 63.158 1.30e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3978g00003 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00003 K09422 - rcu:8258573 222.631