Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3978g00001 GTGAGAGACAGATATCTATACAGTGAAAAAGGAGGATGGGGAAGAGTCCCACGTGGCTGCGCGGAAGGAGGAGGGCTGAACAGAGGAGCATGGACGGTTCAAGAGGACAAGTTACTACTGACTTCTTACATTGAGACACACGGCCAAGCCAGATGGACACGCATCCCTAAAGGAGCTGGCTTGAATAGGAGTGCCAAAAGCTGTAGGCTCAGATGGTTGAACTATCTCATCTGGCCTGGTAAAAGAGGCGGCATCACACAAGATGAAGAAGAACTCATCATTAGGCTTCATAAGCTTCTTGGTAACAGGTGGTCTCTCATAGCTGGAAGGCTACCTGGCCGAACAGACAATGAAATCAAAAACTACTGGAACACCACTTTGGCAAAAAAGCTCAGGACCGGCACAGGCATGTTCAATATCTGA 423 0.4846 VRDRYLYSEKGGWGRVPRGCAEGGGLNRGAWTVQEDKLLLTSYIETHGQARWTRIPKGAGLNRSAKSCRLRWLNYLIWPGIXRGGITQDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRTGTGMFNI 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3978g00001 141 Gene3D - 28 78 - -
Pral3978g00001 141 SMART sant 27 78 IPR001005 -
Pral3978g00001 141 SMART sant 82 130 IPR001005 -
Pral3978g00001 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 76 IPR017930 -
Pral3978g00001 141 Pfam Myb-like DNA-binding domain 28 76 IPR001005 -
Pral3978g00001 141 Pfam Myb-like DNA-binding domain 86 127 IPR001005 -
Pral3978g00001 141 CDD SANT 30 76 IPR001005 -
Pral3978g00001 141 SUPERFAMILY Homeodomain-like 26 124 IPR009057 -
Pral3978g00001 141 CDD SANT 87 128 IPR001005 -
Pral3978g00001 141 Gene3D - 87 138 - -
Pral3978g00001 141 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Pral3978g00001 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 132 IPR017930 -
Pral3978g00001 141 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 20 133 - -
Pral3978g00001 141 ProSiteProfiles Myb-like domain profile. 23 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3978g00001 Pral-Chr3978 79 695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3978g00001 20 132 MYB Transcription Factor Family AT3G13540 66.372 2.86e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3978g00001 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3978g00001 K09422 - fve:101310922 179.104