Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3977g00002 ATGGGGAAGAGTCCACGTGGCTGCGCGGAAGGAGGAGGGCTGAACAGAGGAGCATGGACGGTTCAAGAGGACAAGTTACTGACTTCTTACATTGAGACACACGGCCAAGCCAGATGGACACGCATCCCTAAAGGAGCTGGCTTGAATAGGAGTGCCAAAAGCTGTAGGCTCAGATGGTTGAACTATCTCAGGCCTGGTATTAAAAGAGGCGGCATCACACAAGATGAAGAAGAACTCATCATTAGGCTTCATAAGCTTCTTGGTAACAGGTGGTCTCTCATAGCTGGAAGGCTACCTGGCCGAACAGACAATGAAATCAAGAACTACTGGAACACCACTTTGGCAAAAAAGCTCAGGACACGGGCATGTTCAATATCTGAACAACATGGAACAATGAGATCAGCAGTAAGCAATAAGCCTGATGTGACTCAAACACGAGTAATCCGTACCAAGGCTGGTAGATGCAAGAACGTGGTCATTCAATATCCCCAGAGTGCGAAGGAAAAATCATTAGCTTCGAGCGAGCAGCAGATTTATGAAGCTCACCATCTAATTGCCACTGATGCGTTCTTAAACCAGTGTCAGGGTTCAGAACCTCAGCTTTCACATGAAAATCACGATTCGTCAGATGTGAGTTTGTGGAGTCCTGGAATAAGAGACGAGTTTCTGCATCAACTAAATGAAGCAGACTTTTGTTCATACTTCAACCTTGACGAACTTATGGTCAGTTGGGCCACTAGTGGAATACTCGATGAGGACACCGTCACTGTGGATCTAGATATGGCCCTCATGGATGGCCCTGACTTCGTTTAA 813 0.4662 MGKSPRGCAEGGGLNRGAWTVQEDKLLTSYIETHGQARWTRIPKGAGLNRSAKSCRLRWLNYLRPGIKRGGITQDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLAKKLRTRACSISEQHGTMRSAVSNKPDVTQTRVIRTKAGRCKNVVIQYPQSAKEKSLASSEQQIYEAHHLIATDAFLNQCQGSEPQLSHENHDSSDVSLWSPGIRDEFLHQLNEADFCSYFNLDELMVSWATSGILDEDTVTVDLDMALMDGPDFV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3977g00002 270 CDD SANT 73 114 IPR001005 -
Pral3977g00002 270 FunFam MYB-related transcription factor 15 68 - -
Pral3977g00002 270 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pral3977g00002 270 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pral3977g00002 270 Gene3D - 73 141 - -
Pral3977g00002 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral3977g00002 270 Gene3D - 16 68 - -
Pral3977g00002 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 200 - -
Pral3977g00002 270 CDD SANT 18 63 IPR001005 -
Pral3977g00002 270 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pral3977g00002 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Pral3977g00002 270 SMART sant 15 65 IPR001005 -
Pral3977g00002 270 SMART sant 68 116 IPR001005 -
Pral3977g00002 270 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pral3977g00002 270 Pfam Myb-like DNA-binding domain 72 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3977g00002 Pral-Chr3977 21501 22615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3977g00002 8 118 MYB Transcription Factor Family AT3G13540 69.369 1.74e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3977g00002 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3977g00002 K09422 - fve:101296688 220.32