Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3977g00001 ATGGGTTGGGGTCACCTGGGAAGAACTGGGCAATCCAAGAGGGGTGAGCCGAGCACCAGTGCGGAGGCTGCTCCCGGAAACACCGAACAATCCGTGCCTCGGCAATTCCCCCGGGCGGCTCAGCCTGAGATCATGAGAGCGGCCGAGAAGGATGATCAGTATGCCTCTTTCGTTTATGAAGCCTGTCGCGATGCCTTCCGTCACCTCTTTGGTACTAGAGTTGCAGTTACCTACCAAAGCGAGACAAAACTATTGGGACAGATGCTTTACTATGTGCTGACAACAGGTTCAGGACAGCAGACGCTTGGAGAGGAATATTGTGACATCACTCAGGTTGGAGGACCTTATGGACTTCCTCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGATCGAATAAGTTCTAGAATTGCTTCCCGAGGCATTGCCCTCTCTGATTCACAATCTGCTGAGGTCTATGGCGAAAATGGTACCATTAGGAGTAGTGAATTTCAAACTTCTGATGCGAGGGAACTTCCCTCTTCTGCATCAGGGCAATCTCTTACAACTCTGACAAGGTTGAAGGGGAAACTGAGAGGACTTTGGTTGCATGTTGTTCAGAGATGGCCTACGATGCTTCCTATGGTTCGTGAGTTGTTGCAACTGGTTCTTCGTGCTAATCTTATGTTCTTCTATTTTGAAGGTCTCTATTACCATATATCAAAACGTGCTGCAGGAATTCGATATGTCTTCATTGGAAAGTCATTGAATCAAAGGCCCAGATATCAAATTCTGGGTGTATTTCTATTGATTCAGCTCTGTATAATTGCTGCCGAAGGGCTACGTCGGAGCAATTTATCTTCAATTGCGAGTTCAGTTCATCAGACATCCTTTGGGGCGCACCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAGGAGGGTCTCCCAGTATCGTCAGACACAGACAAAGGAAATTGGTTATCTGACACTACACATTCGGAGTCCCAAGCAGCTAGTGGAGTGGCCAAATGCACGCTCTGCCTGAGTAATCGGCAGAACCCAACAGCCACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCTTAACCCACTCAAGTCTAGTGTGTCTCTATCATTCAGACTTCTAG 1209 0.4789 MGWGHLGRTGQSKRGEPSTSAEAAPGNTEQSVPRQFPRAAQPEIMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIADRISSRIASRGIALSDSQSAEVYGENGTIRSSEFQTSDARELPSSASGQSLTTLTRLKGKLRGLWLHVVQRWPTMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKSLNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVHQTSFGAHQRSAGRGLPVLNEEGLPVSSDTDKGNWLSDTTHSESQAASGVAKCTLCLSNRQNPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3977g00001 402 MobiDBLite consensus disorder prediction 1 36 - -
Pral3977g00001 402 ProSitePatterns Zinc finger RING-type signature. 363 372 IPR017907 -
Pral3977g00001 402 Pfam Zinc finger, C3HC4 type (RING finger) 347 390 - -
Pral3977g00001 402 CDD RING-HC_PEX10 346 397 - -
Pral3977g00001 402 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 37 400 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Pral3977g00001 402 SMART ring_2 348 385 IPR001841 -
Pral3977g00001 402 MobiDBLite consensus disorder prediction 12 35 - -
Pral3977g00001 402 Pfam Pex2 / Pex12 amino terminal region 51 285 IPR006845 -
Pral3977g00001 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 399 IPR013083 -
Pral3977g00001 402 ProSiteProfiles Zinc finger RING-type profile. 348 386 IPR001841 -
Pral3977g00001 402 FunFam Peroxisome biogenesis factor 10 323 399 - -
Pral3977g00001 402 SUPERFAMILY RING/U-box 347 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3977g00001 Pral-Chr3977 13909 18150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3977g00001 343 398 C3H Transcription Factor Family AT4G27470 37.879 3.72e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3977g00001 K13346 - qsa:O6P43_015847 642.884