Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00043 ATGGATGCTAAGTATCGAGCTTCCAAAGGCGGTGAAGTGAGCATGACGGAGAAGAAAACAACCAACGAAGGAGAAGTGGTGGTGACTATTCCGGGCCGGCAGAATCCGAATCTTAGTGGAGAGAGTCCAAGCTCCAAAGTGACTGAATCTAAAAATACGTCCACGGAGTACGCCGCTAACAGGCATGCCTCCTTAAAGTCCCCAGCTTTAAATCATGCTTCCCCCGAGATAAGGTCCAGTTCCAGCCCAGACAAGTCCCCAGAAGTTTCTGCTACGATCCGAAACCTTGTTCGCAGAAAGTCTCTGCAAAGGTCAGTGTATTCCAAGCCTAAATCTAGATTTGTGGAACAACCTTATCCTGCCGACGCAGCAGTTTTAGAAGAGAATGTTCCCTCCACACTGCAAGAACAGCTTGCCTTTAGCTCATCCTATAGGCAGTCGGTCAATGAAGCATCACCCAATAACAAATCTACTGCTGTTAATAGGACAGTGTCCATTAGTTCCGTCACTCCTGAAACTGCATTGAGGGCGTCCTCGGGGCCAGCTGGGGAAGATGAGGATGAAATCGTTTACAAGAAAGTTGAACTGAGTAAAGGGAAGCGTAAGAAGGTGAAGGTTAAGGCTGTGATTGAGTGTATTATGCTTGCGTTCATTACGGGATTCTTGATGGCTAGCCTGAGTGTTGAAAACATGAAAAACGTAACGATTTGGGGGTTGGAGTTTTGGAAGTGGTGTGTACTTTTGATGGTTACCTTTTGTGGCTTGTTGATTACCAGATGGTTCATGCACATTATAGTTTTCCTGATTGAAATGAACTTTTTACTGAGGAAAGAGGTTCTCTATTTTGTTCATGGACTAAAGAAAAGTGTCCAAGTCTTCATTTGGCTGGGTTTGATTCTTCTCGCTTGGGTTCTCTTAATCAATCACGGAGTCCAGCGATCAGAACTTTGCACAAAAATTTTGAATGGTGTAACATGGACTCTTGTTTCTCTTCTAATTGGGTCGTTCTTATGGATGGTGAAGACGTTACTGCTGAAGATATTAGCCTCAAATTTCCATGTTAAATCTTTTTTTGATAGAATTCAAGTATCAATTTTCCATCAGTATGTTTTACAGAGTCTGTCTGGGCCTCCATTAATAGAGGAGGCTGAGAAAGATGGTAGATCACCGACTGCTGGCCAGGTTAGTTTCAGGAGTACAAAAGGTGAAAAACGCACAAAGAAAGAGGTTATTAATATGGCAACTTTTCACAAGATGAAGCGGGAGAAAGTTTCTGCTTGGACAATGAAGATTTTGGTTGATGCAGTGGCAAATTCAAGGCTGTCCACAATCTCTAATGTGAAAGATGAGAGCTTTGATGACGGAGGACAAGAACAAACCGACAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTGCATATAAGATTTTCAGGAATGTCTCTGCCCCTGGTTGCTCGTACATAGATGAAGATGACCTCCTGAGGTTCATGATTAAGGAAGAAGTAGATCTGATCTTTCCCCTGTTTGAAGGATCAGACAGTGGACGAATAGACAGAAAGGCTTTGACAAAATGGGTGGTAAAGGTCTATCAGGAACGCAAGGCATTGGCACATGCCTTAAGCGACACCAAGACTGCTGTAAAGCAATTGAACAAGCTTGTGACAGGGGTCCTGGTTATTTTGATCATAATTTTGTGGCTTATACTGGTGGGGATTGCAACAACAAAAGTACTGGTGTTCATTTCTTCTCAGCTAGTGTTTGCTACCTTCATGTTTGGAAACACGTGCAAAAATATATTTGAGGCTATCGTATTTGTGTTTGTAATGCATCCATTTGATGTTGGCGACCGATGTGTTGTAGATGGGGTTCAGCTATTGGTTGAAGAAATGAACATCCTGACAACGGTTTTCTTGAAACCCGATAATGAGAAGGTGTTCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACAGAAGCCCGGATATGGGTGACGCTATAGAGTTTTCAATTGACTTTATGACACCATTGGAGAGGATTGGGGCACTGAAGGGAAAAATAAAGAGGTACTTGGAGAGAAATCCGCATCACTGGCATGCTAATCATACCGTAATGGTTAAGCAGATAGAAAATTTGAATACTATTAAAATGGCTCTGTATGTTAGCCACACAATGAATTTTCAAGACTACGGGGAGAAGAACAGGAGGATAGCAGAACTGGTGATGGAACTAAAGAAAATATTCGAGGAGCTTGATATGAGATACAATCTTCTTCCTCAGGCAGTCCATGTCAGCTATGTTGGATCAGTTACGGGCCCACTAAAGTGA 2340 0.4256 MDAKYRASKGGEVSMTEKKTTNEGEVVVTIPGRQNPNLSGESPSSKVTESKNTSTEYAANRHASLKSPALNHASPEIRSSSSPDKSPEVSATIRNLVRRKSLQRSVYSKPKSRFVEQPYPADAAVLEENVPSTLQEQLAFSSSYRQSVNEASPNNKSTAVNRTVSISSVTPETALRASSGPAGEDEDEIVYKKVELSKGKRKKVKVKAVIECIMLAFITGFLMASLSVENMKNVTIWGLEFWKWCVLLMVTFCGLLITRWFMHIIVFLIEMNFLLRKEVLYFVHGLKKSVQVFIWLGLILLAWVLLINHGVQRSELCTKILNGVTWTLVSLLIGSFLWMVKTLLLKILASNFHVKSFFDRIQVSIFHQYVLQSLSGPPLIEEAEKDGRSPTAGQVSFRSTKGEKRTKKEVINMATFHKMKREKVSAWTMKILVDAVANSRLSTISNVKDESFDDGGQEQTDKEITNEMEATAAAYKIFRNVSAPGCSYIDEDDLLRFMIKEEVDLIFPLFEGSDSGRIDRKALTKWVVKVYQERKALAHALSDTKTAVKQLNKLVTGVLVILIIILWLILVGIATTKVLVFISSQLVFATFMFGNTCKNIFEAIVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKPDNEKVFYPNSVLATKPISNYYRSPDMGDAIEFSIDFMTPLERIGALKGKIKRYLERNPHHWHANHTVMVKQIENLNTIKMALYVSHTMNFQDYGEKNRRIAELVMELKKIFEELDMRYNLLPQAVHVSYVGSVTGPLK 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00043 779 MobiDBLite consensus disorder prediction 73 89 - -
Pral3976g00043 779 Gene3D - 612 661 IPR023408 -
Pral3976g00043 779 MobiDBLite consensus disorder prediction 32 61 - -
Pral3976g00043 779 MobiDBLite consensus disorder prediction 1 95 - -
Pral3976g00043 779 MobiDBLite consensus disorder prediction 383 402 - -
Pral3976g00043 779 FunFam Predicted mechanosensitive ion channel 612 661 - -
Pral3976g00043 779 PIRSF Memb_At2g17000 12 777 IPR016688 -
Pral3976g00043 779 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 9 769 IPR016688 -
Pral3976g00043 779 SUPERFAMILY Sm-like ribonucleoproteins 602 661 IPR010920 -
Pral3976g00043 779 Pfam Mechanosensitive ion channel 553 754 IPR006685 GO:0016020|GO:0055085
Pral3976g00043 779 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00043 Pral-Chr3976 236396 241033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00043 52 769 Mechanosensitive Ion Channel Family AT5G12080 57.182 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00043 K22048 - qsa:O6P43_019135 1041.18