Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00042 ATGTATGCAGGATTCTTGATGGATGCCAAGTATCGAGCTTCCAAAGGCGGTGAAGTGAGCATGACGGAGAAGAAAACAACCAACGAAGGAGAAGTGGTGGTGACTATTCCGGGCCAGCAGAATCCGAATCTGAGTGGAGAGAGTCCAAGCTCCAAAGTGACTGAATCTAACAATACGTCCACGGAGTACGCCGCTAACGGGCATGCCTCCTTAAAGTCCCCAGCTTTAAATCATGCTTCCCCCCAGATAAGGCCCAGTTCCAGCCCAGACAAGTCCCCAGAAGTTTCTGCTACGACCCGAAACCTTGTTCGCAGAAAGTCTCTACAAAGGTCAGTGTATTCCAAGCCTAAATCTAGATTTGTGGAACAACCTTATCCTGCTGACGCGGCAGTTTTAGAAGAGAATGTTCACTCCACACTGCAAGAACAGCTTGCCTTTAGTTCGCCCTATAGGCAGTCGGTCAATGAAGCATCACCCAATAACAAATCCACTGCTGTTAATAGGACAGTGTCCATTAGTTCCGTCACTCCTAAAACTCCATTGATGGCGTCTCCGGGGCCAGCTGGGGAAGATGAGGATGAAATCGTTTACGAGGAAGCTGAACTGAGTAAAGGGAAGCGTAAGAAGGTGAAGGTTAAGGCTTTGATTGAGTGTATTATGCTTGCGTGCATTACGGGATTCTTGGTGGCTAGCCTGAGTGTTGAAAAATTGAAAAACGTAACGATTTGGGGGTTGGGGTTTTGGAAGTGGTGTGTACTTCTGATGGTTACCTTTTGTGGCTTGTTGATTACCAGATGGTTCATGCACATTATAGTTTTCCTGATTGAAATGAACTTTTTACTGAGGAAAAAGGTTCTTTATTTTGTTCATGGACTAAAGAAAAGTGTCCAAGTCTTCATTTGGCTGGGTTTGGTTCTTCTCGCTTGGGTTCTGTTAATCAATCGCGGGGTCCAGCGATCAGAACTTGGCACAAAAATTTTGAATGGTGTAACATGGACTCTTGTTTCTCTTCTAATTGGGTCGTTCTTATGGATGTTGAAGACGTTACTGCTGAAGATATTAGCCTCAAATTTCCATGTCAAATCTTTTTTTGATAGAATTCAAGAATCAATTTTCCATCAGTATGTTTTACAGAGTCTGTCTGGGCCTCCATTAATAGAGGAGGCTGAGAAGGTTGGTAGATCACCGAGTGCTGGCCAGGTTAGTTTCAGGAGTACAAAAGGTGAAAAACGCACAAGGAAGGAGGTTATTAATATGGCAACTTTTCACAAGATGAAACGGGAGAAAGTTTCTGCTTGGACAATGAAGATTTTGGTTGATGCAGTGGCAAATTCGAGGCTGTCCACAATCTCTAATGTGATAGATGAGAGCTTTGATGACGGAGGACTAGAACAAACCGACAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTGCATATAAGATTTTCAGGAATGTCTCTGCCCCTGGCTGCTCGTACATAGATGAAGATGACCTCCTGAGGTTCATGATTAAGGAAGAAGTAGATCTGATCTTTCCCCAATTTGAAGGATCAGAGACTGGACGAATAGACAGAAAGGCTTTGACAAAATGGGTGGTGAATGTCTATCAGGAACGCAAGGCATTGGCACATGCCTTAAGCGACACCAAGACTGCTGTAAAGCAATTGAACAAGCTTGTGACGGGGCTCCTGGTTATTTTGATCATAATTTTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTGGTGTTCATTTCTTCTCAGCTAGTGGTTGCTACCTTCATGTTTGGAAACACGTGCAAAAATATATTTGAGGCTATCGTATTTGTGTTTGTAATGCATCCATTTGACGTTGGCGACCGATGTGTTGTAGATGGGGTTCAGCTATTGGTTGAAGAAATGAACATCCTGACAACGGTGTTCTTGAAACTTAATAATGAGAAGGTGTTCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACAGAAGCCCGGACATGGGTGACACTATAGAGTTTTCAATTGACTTTATGACACCATTGGAGAGGATTGGGGCACTGAAGGAAAAAATAAAGAGGTACTTGGAGAGAAATCCGCAACACTGGCATGCTAATCATAACGTAATAGTTAAGGAGATAGAAAATGTGAATAAGATTAAAATAGCTCTGTATGTTAACCACACAATGAATTTTCAAGACTACGCGGAGAAGAACAGGAGGAGAGCAGAACTGGTGATGGAACTAAAGAAAATATTTGAGGATCTTGATATTAGATACAATCTTCTTCCTCAGGCAGTCCATGTCAGTTATGTTGGATCAGATACGGGCCCCCTCAAGTGA 2358 0.4288 MYAGFLMDAKYRASKGGEVSMTEKKTTNEGEVVVTIPGQQNPNLSGESPSSKVTESNNTSTEYAANGHASLKSPALNHASPQIRPSSSPDKSPEVSATTRNLVRRKSLQRSVYSKPKSRFVEQPYPADAAVLEENVHSTLQEQLAFSSPYRQSVNEASPNNKSTAVNRTVSISSVTPKTPLMASPGPAGEDEDEIVYEEAELSKGKRKKVKVKALIECIMLACITGFLVASLSVEKLKNVTIWGLGFWKWCVLLMVTFCGLLITRWFMHIIVFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLAWVLLINRGVQRSELGTKILNGVTWTLVSLLIGSFLWMLKTLLLKILASNFHVKSFFDRIQESIFHQYVLQSLSGPPLIEEAEKVGRSPSAGQVSFRSTKGEKRTRKEVINMATFHKMKREKVSAWTMKILVDAVANSRLSTISNVIDESFDDGGLEQTDKEITNEMEATAAAYKIFRNVSAPGCSYIDEDDLLRFMIKEEVDLIFPQFEGSETGRIDRKALTKWVVNVYQERKALAHALSDTKTAVKQLNKLVTGLLVILIIILWLLLMEIATTKVLVFISSQLVVATFMFGNTCKNIFEAIVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVFYPNSVLATKPISNYYRSPDMGDTIEFSIDFMTPLERIGALKEKIKRYLERNPQHWHANHNVIVKEIENVNKIKIALYVNHTMNFQDYAEKNRRRAELVMELKKIFEDLDIRYNLLPQAVHVSYVGSDTGPLK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00042 785 Pfam Mechanosensitive ion channel 559 764 IPR006685 GO:0016020|GO:0055085
Pral3976g00042 785 MobiDBLite consensus disorder prediction 12 119 - -
Pral3976g00042 785 PIRSF Memb_At2g17000 18 782 IPR016688 -
Pral3976g00042 785 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 15 775 IPR016688 -
Pral3976g00042 785 SUPERFAMILY Sm-like ribonucleoproteins 608 667 IPR010920 -
Pral3976g00042 785 Gene3D - 618 667 IPR023408 -
Pral3976g00042 785 MobiDBLite consensus disorder prediction 26 116 - -
Pral3976g00042 785 FunFam Predicted mechanosensitive ion channel 618 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00042 Pral-Chr3976 221255 224966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00042 21 775 Mechanosensitive Ion Channel Family AT5G12080 57.441 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00042 K22048 - qsa:O6P43_019135 1074.69