Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00041 ATGGATGCCAAGTATCGAGCTTCCAAAGGCGGTGAAGTGAGCATGACGGAGAAGAAAACAACCAACGAAGGAGAAGTGGTGGTGACTATTCCGGGCCAGCAGAATCCGAATCTGAGTGGAGAGAGTCCAAGCTCCAAAGTGACTGAATCTAACAATACGTCCACGGAGTACGCCGCTAACGGGCATGCCTCCTTAAAGTCCCCAGCTTTAAATCATGCTTCCCCCCAGATAAGGCCCAGTTCCAGCCCAGACAAGTCCCCAGAAGTTTCTGCTACGACCCGAAACCTTGTTCGCAGAAAGTCTCTACAAAGGTCAGTGTATTCCAAGCCTAAATCTAGATTTGTGGAACAACCTTATCCTGCTGACGCGGCAGTTTTAGAAGAGAATGTTCACTCCACACTGCAAGAACAGCTTGCCTTTAGTTCGCCCTATAGGCAGTCGGTCAATGAAGCATCACCCAATAACAAATCCACTGCTGTTAATAGGACAGTGTCCATTAGTTCCGTCACTCCTAAAACTCCATTGATGGCGTCTCCGGGGCCAGCTGGGGAAGATGAGGATGAAATCGTTTACGAGGAAGCTGAACTGAGTAAAGGGAAGCGTAAGAAGGTGAAGGTTAAGGCTTTGATTGAGTGTATTATGCTTGCGTGCATTACGGGATTCTTGGTGGCTAGCCTGAGTGTTGAAAAATTGAAAAACGTAACGATTTGGGGGTTGGGGTTTTGGAAGTGGTGTGTACTTCTGATGGTTACCTTTTGTGGCTTGTTGATTACCAGATGGTTCATGCACATTATAGTTTTCCTGATTGAAATGAACTTTTTACTGAGGAAAAAGGTTCTTTATTTTGTTCATGGACTAAAGAAAAGTGTCCAAGTCTTCATTTGGCTGGGTTTGGTTCTTCTCGCTTGGGTTCTGTTAATCAATCGCGGGGTCCAGCGATCAGAACTTGGCACAAAAATTTTGAATGGTGTAACATGGACTCTTGTTTCTCTTCTAATTGGGTCGTTCTTATGGATGTTGAAGACGTTACTGCTGAAGATATTAGCCTCAAATTTCCATGTCAAATCTTTTTTTGATAGAATTCAAGAATCAATTTTCCATCAGTATGTTTTACAGAGTCTGTCTGGGCCTCCATTAATAGAGGAGGCTGAGAAGGTTGGTAGATCACCGAGTGCTGGCCAGGTTAGTTTCAGGAGTACAAAAGGTGAAAAACGCACAAGGAAGGAGGTTATTAATATGGCAACTTTTCACAAGATGAAACGGGAGAAAGTTTCTGCTTGGACAATGAAGATTTTGGTTGATGCAGTGGCAAATTCGAGGCTGTCCACAATCTCTAATGTGATAGATGAGAGCTTTGATGACGGAGGACTAGAACAAACCGACAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTGCATATAAGATTTTCAGGAATGTCTCTGCCCCTGGCTGCTCGTACATAGATGAAGATGACCTCCTGAGGTTCATGATTAAGGAAGAAGTAGATCTGATCTTTCCCCAATTTGAAGGATCAGAGACTGGACGAATAGACAGAAAGGCTTTGACAAAATGGGTGGTGAATGTCTATCAGGAACGCAAGGCATTGGCACATGCCTTAAGCGACACCAAGACTGCTGTAAAGCAATTGAACAAGCTTGTGACGGGGCTCCTGGTTATTTTGATCATAATTTTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTGGTGTTCATTTCTTCTCAGCTAGTGGTTGCTACCTTCATGTTTGGAAACACGTGCAAAAATATATTTGAGGCTATCGTATTTGTGTTTGTAATGCATCCATTTGACGTTGGCGACCGATGTGTTGTAGATGGGGTTCAGCTATTGGTTGAAGAAATGAACATCCTGACAACGGTGTTCTTGAAACTTAATAATGAGAAGGTGTTCTATCCAAACTCAGTTCTGGCCACAAAACCCATTAGCAATTATTACAGAAGCCCGGACATGGGTGACACTATAGAGTTTTCAATTGACTTTATGACACCATTGGAGAGGATTGGGGCACTGAAGGAAAAAATAAAGAGGTACTTGGAGAGAAATCCGCAACACTGGCATGCTAATCATAACGTAATAGTTAAGGAGATAGAAAATGTGAATAAGATTAAAATAGCTCTGTATGTTAACCACACAATGAATTTTCAAGACTACGCGGAGAAGAACAGGAGGAGAGCAGAACTGGTGATGGAACTAAAGAAAATATTTGAGGATCTTGATATTAGATACAATCTTCTTCCTCAGGCAGTCCATGTCAGTTATGTTGGATCAGATACGGGCCCCCTCAAGTGA 2340 0.4291 MDAKYRASKGGEVSMTEKKTTNEGEVVVTIPGQQNPNLSGESPSSKVTESNNTSTEYAANGHASLKSPALNHASPQIRPSSSPDKSPEVSATTRNLVRRKSLQRSVYSKPKSRFVEQPYPADAAVLEENVHSTLQEQLAFSSPYRQSVNEASPNNKSTAVNRTVSISSVTPKTPLMASPGPAGEDEDEIVYEEAELSKGKRKKVKVKALIECIMLACITGFLVASLSVEKLKNVTIWGLGFWKWCVLLMVTFCGLLITRWFMHIIVFLIEMNFLLRKKVLYFVHGLKKSVQVFIWLGLVLLAWVLLINRGVQRSELGTKILNGVTWTLVSLLIGSFLWMLKTLLLKILASNFHVKSFFDRIQESIFHQYVLQSLSGPPLIEEAEKVGRSPSAGQVSFRSTKGEKRTRKEVINMATFHKMKREKVSAWTMKILVDAVANSRLSTISNVIDESFDDGGLEQTDKEITNEMEATAAAYKIFRNVSAPGCSYIDEDDLLRFMIKEEVDLIFPQFEGSETGRIDRKALTKWVVNVYQERKALAHALSDTKTAVKQLNKLVTGLLVILIIILWLLLMEIATTKVLVFISSQLVVATFMFGNTCKNIFEAIVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLNNEKVFYPNSVLATKPISNYYRSPDMGDTIEFSIDFMTPLERIGALKEKIKRYLERNPQHWHANHNVIVKEIENVNKIKIALYVNHTMNFQDYAEKNRRRAELVMELKKIFEDLDIRYNLLPQAVHVSYVGSDTGPLK 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00041 779 Gene3D - 612 661 IPR023408 -
Pral3976g00041 779 PIRSF Memb_At2g17000 12 776 IPR016688 -
Pral3976g00041 779 MobiDBLite consensus disorder prediction 1 109 - -
Pral3976g00041 779 SUPERFAMILY Sm-like ribonucleoproteins 602 661 IPR010920 -
Pral3976g00041 779 FunFam Predicted mechanosensitive ion channel 612 661 - -
Pral3976g00041 779 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 9 769 IPR016688 -
Pral3976g00041 779 Pfam Mechanosensitive ion channel 553 758 IPR006685 GO:0016020|GO:0055085
Pral3976g00041 779 MobiDBLite consensus disorder prediction 1 19 - -
Pral3976g00041 779 MobiDBLite consensus disorder prediction 20 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00041 Pral-Chr3976 220675 224966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00041 15 769 Mechanosensitive Ion Channel Family AT5G12080 57.441 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00041 K22048 - qsa:O6P43_019135 1074.69