Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00036 ATGGACGGGGGTGCTCCCTACAATCCTCGCACGGTTGAAGAGGTCTTCAGGGATTTCAAGGGTCGCCGTGCTGGCATGATTAGGGCCCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCTGAGAAGGAGAACCTGTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCTGAGGAAGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGTATTAACTTTGCCAGAGATGGGATGCAAGAAAAAGATTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGCTACTTGCTGTAGCCTTTTATTTTGGTGCTAGATTTGGATTTGATAAGGCTGATAGGAAGCGATTGTTTAATATGATAAATGATCTTCCAACAATATTTGAGGTTGTTACGGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAACCATAGCAGTAACAAATCCAAATCAAACTCTAAGAGAGGATCTGAGTCTCAAGGAAAGTATTCAAAAGCAATGCAATCAAAGGATGAAGATGAGGAGGGTTTGGATGAAGAAGACGAGGAGGAGCATGGAGAGACACTATGCGGGGCATGTGGAGAGAACTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGGAAGTGTGTGAAGATCACCCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGTCCGTCCTGTAGCAACAAGAGATCTCGACCTTGA 762 0.4606 MDGGAPYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESQGKYSKAMQSKDEDEEGLDEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00036 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Pral3976g00036 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Pral3976g00036 253 CDD PHD_AL_plant 199 249 IPR044104 -
Pral3976g00036 253 SMART PHD_3 199 247 IPR001965 -
Pral3976g00036 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Pral3976g00036 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pral3976g00036 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Pral3976g00036 253 MobiDBLite consensus disorder prediction 144 193 - -
Pral3976g00036 253 FunFam PHD finger alfin-like protein 192 248 - -
Pral3976g00036 253 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Pral3976g00036 253 MobiDBLite consensus disorder prediction 150 174 - -
Pral3976g00036 253 Pfam PHD-finger 200 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00036 Pral-Chr3976 193388 198573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00036 1 252 Alfin-like Transcription Factor Family AT3G42790 78.261 5.28e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral3976g00036 Alfin 6.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00036 K26274 - pop:7476667 462.611