LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3976g00025	ATGCCTGTCCACCAGCCGTTCGATGGCAGAGCTCTGCCTCTAAACACCACCGTGGTGGCCGTCGACAAAGGCAAGACCAGTGTATATGCCTTCCGGTGGGCCCTTAATCATCTTGATAGTCCCATCATCGTCGCTCTCCACGTTAGGCCAAAACACATTCCACCGCATTACGTAGACCAGGGCCTCAAGGTTTTTCCCCCTGAGGAAAGCGATGTAGCCAATGTTTTTTCTGCATTACGAGAAATACGTTCCCATAAGGCGGTGACGATAAAAGAAGCCGTAGTTGATGATAGTGATGTTGTCAAAGGAATTTCAGACTTTGCAAACAAGCATCACATCAACAGTATCGTTATCGGCGCAACGGCTAGCTGGAACTCTCTGGCAAGGAAATTTATAGGTTTTGATTTGCCAACGGCCATAATCAAATCAGCTCCAGATTATACTTCTGTGTACATAATTTCAAAAGGAAAGATAATCTCAGCTCGATCAGCCCTACGTCCTATGTCGAGCGTGTTTGTCTCATCAAAGCATCCGCCGGCTCTTCAACTAAATGATGTAGAAAACGGAGTAAGGGAACAGGCAGCTAAAAGAGGAGGGATGGCAGAGGGATCAGTAAGAGCGTCTTCCGAGAGGAACAATAACGGAGTAAGGCAAAAGAATTCTGGCGGTTCGTCGATGGATAAAATCAACTTGCCCAATCGTGGGCCGAAGCCATCAGCTGGCATTGATTCCTTTTCAGACGAAAGTGTTTCCTCAGATCAGACTAATCAAGATATGGGGTTTAGCTTTTCATCTGATGGCTCCAGGGTGTCGTCATCTTCCCAGCCCTCAAAAGAACTAGAAGCTGAGATGAAGAGATTGAGGCTTGAACTGAAGCAAACCATGGACATGTACAGCTCAGCTTGCAAAGAGGCGATCTCAGCAAAAAATGAGGCTAACGAGATTAATCAATGGAAACTGGAGGAGGCACGCAAACTTGAAGAAGCCCTCTTGTCAGGAGAGGCAGCTCTTGCACTAGCAGAAAAGGAGAAGGCTAGAGCTCAAGCTGCCATAGAAGAAGCTGAGGAAGCCAAGAAAATGGCTGAGAAGGAAGCAGAGAGGAGGAGACATGCAGAGCTGAAGGCCAGGAAAGAGGCAGAAGAGAAGGACCGAGCATTAACTGCTTTGGCTAAAAATGACGTTCGATATAGAAAATATACTATAGAGGAGATCAAACAGGCTACTGAAAAGTTCTCCCCGTCCTTGAAAATAGGTGAAGGTGGATATGGGCCTGTGTTTAAAGGTGAACTTGATCACACCCCAGTTGCGATCAAAATCTTAAGACCTGATGCTTCCCAAGGCAGGAAGCAGTTTCACCAAGAGGTTGAGGTATTATGCTGCATTAGACATCCTAATATGGTCCTCCTCCTTGGTGCCTGTCCTGATTATGGATGTCTGGTGTATGAATACTTGGATAATGGTAGCTTAGAGGATAGATTACTTCAGAAGAATAATAGCCCACCTCTTTCGTGGAGGTTGAGGTTCACAATAGCTGCTGAAATTGCAACGGCACTTCTTTTCCTTCACCAAAGCAAGCCAGAGCCTCTTGTGCATCGGGACCTAAAACCAGCCAACATCCTCCTTGACCGGAATTATGTGAGTAAAATCAGTGACGTGGGCCTGGCACGATTGGTTCCGGCTTCTGTAGCTGATTCTGTCACACAATATTACATGACTTCGGCTGCCGGAACCTTTTGCTACATTGATCCTGAGTATCAACAAACAGGAAAGTTAACAACTAAATCCGATATATATTCACTGGGGATAATGCTGCTGCAAATTATCACAGCCAAGCCTCCCATGGGTCTTGCTCACCATGTCAAAAGGGCAATGGAAAAGGGAAAGTTTTCAGAAATGCTTGATCCTACAGTGACTGATTGGCCAATTGAGGAGGCTCAAGCATTTGCCAAAGTGGCAGTGACTTGCGCAGAGCTTAGCAAGAAGGACAGGCCTGAACTTGCAACAGTTGTTGTTCCCGAGCTTAACCGATTAAGGAATTTTGCTCTCTCGTCTCGCCCTAATCCTATTGTCACCGACAATCAGAGTCAGGCGGAATGCTCTCCTACACCTACACGAAATTCATGA	2124	0.4628	MPVHQPFDGRALPLNTTVVAVDKGKTSVYAFRWALNHLDSPIIVALHVRPKHIPPHYVDQGLKVFPPEESDVANVFSALREIRSHKAVTIKEAVVDDSDVVKGISDFANKHHINSIVIGATASWNSLARKFIGFDLPTAIIKSAPDYTSVYIISKGKIISARSALRPMSSVFVSSKHPPALQLNDVENGVREQAAKRGGMAEGSVRASSERNNNGVRQKNSGGSSMDKINLPNRGPKPSAGIDSFSDESVSSDQTNQDMGFSFSSDGSRVSSSSQPSKELEAEMKRLRLELKQTMDMYSSACKEAISAKNEANEINQWKLEEARKLEEALLSGEAALALAEKEKARAQAAIEEAEEAKKMAEKEAERRRHAELKARKEAEEKDRALTALAKNDVRYRKYTIEEIKQATEKFSPSLKIGEGGYGPVFKGELDHTPVAIKILRPDASQGRKQFHQEVEVLCCIRHPNMVLLLGACPDYGCLVYEYLDNGSLEDRLLQKNNSPPLSWRLRFTIAAEIATALLFLHQSKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPASVADSVTQYYMTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQIITAKPPMGLAHHVKRAMEKGKFSEMLDPTVTDWPIEEAQAFAKVAVTCAELSKKDRPELATVVVPELNRLRNFALSSRPNPIVTDNQSQAECSPTPTRNS	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3976g00025	707	Gene3D	HUPs	14	145	IPR014729	-
	Pral3976g00025	707	MobiDBLite	consensus disorder prediction	192	280	-	-
	Pral3976g00025	707	Coils	Coil	323	383	-	-
	Pral3976g00025	707	MobiDBLite	consensus disorder prediction	206	228	-	-
	Pral3976g00025	707	Pfam	Universal stress protein family	18	133	IPR006016	-
	Pral3976g00025	707	Gene3D	Phosphorylase Kinase; domain 1	389	483	-	-
	Pral3976g00025	707	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	529	541	IPR008271	GO:0004672\|GO:0006468
	Pral3976g00025	707	Coils	Coil	277	297	-	-
	Pral3976g00025	707	MobiDBLite	consensus disorder prediction	685	707	-	-
	Pral3976g00025	707	ProSiteProfiles	Protein kinase domain profile.	411	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3976g00025	707	Pfam	Protein tyrosine and serine/threonine kinase	416	670	IPR001245	GO:0004672\|GO:0006468
	Pral3976g00025	707	Gene3D	Transferase(Phosphotransferase) domain 1	484	687	-	-
	Pral3976g00025	707	SUPERFAMILY	Protein kinase-like (PK-like)	395	670	IPR011009	-
	Pral3976g00025	707	SMART	serkin_6	411	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3976g00025	707	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	122	-	-
	Pral3976g00025	707	FunFam	U-box domain-containing protein 51	484	684	-	-
	Pral3976g00025	707	MobiDBLite	consensus disorder prediction	244	278	-	-
	Pral3976g00025	707	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	384	483	-	-
	Pral3976g00025	707	PANTHER	OS02G0152300 PROTEIN	18	697	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3976g00025	Pral-Chr3976	138580	142328	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3976g00025	90	686	Receptor kinase-like Gene Family	AT5G12000	60.225	0.0	705

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Pral3976g00025		PK_Tyr_Ser-Thr	2.7e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3976g00025	-		-	qsa:O6P43_015879	751.895