Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00009 ATGATGAAAGCTTTGCTGGTGGATGAGAATATGTCAAATTTGACATCTGCATCTAGTGAAATAAGCGCTTCTTCTGGGACCAGAAATGATACTCCTGTCTCTCTCTATCCTCAGCAGTACTCCTCCACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAACCTTCCGGGAAATCCAGACCCGGAGGCTGAAGTAATAGCCTTATCTCCCAAGTCCCTCTTGGCGACAAACCGATTCATTTGCGAAATATGCAACAAAGGGTTCCAAAGAGACCAAAATCTTCAGCTTCACAGAAGAGGTCACAACCTGCCATGGAAGCTCAAGCAAAGAAACAACAAAGAAGTCATCAAAAAGAAGGTTTATGTGTGCCCGGAGGTAACATGTGTTCACCATGACCCCTCAAGGGCCCTCGGAGACCTCACTGGCATCAAGAAGCATTTCTGCAGGAAGCACGGCGAGAAAAAATGGAAGTGTGAAAAATGCTCCAAGCGTTACGCTGTTCAGTCTGACTGGAAGGCTCACTCTAAAATTTGTGGCACCAAGGAGTACAAATGTGATTGCGGAACCATCTTCTCTAGAAGGGACAGTTTCATCACACACAGAGCCTTCTGTGATGCTTTAGCACAGGAGAGTGCAAGAACAATTACGGCAGTGAACCCCCTTCTTCATAGCCATCCCCTCCAAGCTCCCCCACCACCACCAACAATATTAGCAAAAAAAGAACAAGATTTTCCACCATGGTTGGGAGAAGCTGCAAATGGAGACACTTTCAGGCCATTAGTCTCCCCCTCACATCTAGATCATTCCTTCAATTTAATCCATCACCATCATCAAAACCCTAACCCCGCACCGTCCCTTCCTCATTTCCAATCCCCAGCCCCTCCTTACATGTCAGCCACTGCTTTGTTGCAGAAAGCATCACAAATAGGTCACATGCCTCAATCTGATCGTCAATGTACCACCATGCCTAATTCATCCTCTTCTTCAGCCGTTTCTGGTTTGGGTATGCCTTCACGTGACCAGATGGGGTTGCCTCATGCCTTGGCTTCTTATGGGAATAAAGCTGCAGGGTTCCCTTCTGAATACTTAGAAGATGGTGTTACTGCTGTAAATTGCAACAAAGCATCTCCACCTGCTACTTCTCTTTTCCATGACATGATGGCGAATACTGCTTCTTCTGCTACAGCCTTTGAGAGATCTTCCTTCGAGGATGCTTTGAGAGGAATGTTGAATCCAGCAAGAGACACTGCTAGCGATGAAATGACCCGAGATTTTCTGGGTCTCAAGGCTTTTTCTCAAAAAGATTTTTTCAACATATCGGGGCTTGACCATTTGGGTTCTTCGTCGTATGGTAAGCAAAGTCGCAACCAAACACCTTGGCAAGGTTAA 1395 0.4581 MMKALLVDENMSNLTSASSEISASSGTRNDTPVSLYPQQYSSTSTNQEPQPKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKKVYVCPEVTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALAQESARTITAVNPLLHSHPLQAPPPPPTILAKKEQDFPPWLGEAANGDTFRPLVSPSHLDHSFNLIHHHHQNPNPAPSLPHFQSPAPPYMSATALLQKASQIGHMPQSDRQCTTMPNSSSSSAVSGLGMPSRDQMGLPHALASYGNKAAGFPSEYLEDGVTAVNCNKASPPATSLFHDMMANTASSATAFERSSFEDALRGMLNPARDTASDEMTRDFLGLKAFSQKDFFNISGLDHLGSSSYGKQSRNQTPWQG 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00009 464 FunFam protein indeterminate-domain 5, chloroplastic-like 136 215 - -
Pral3976g00009 464 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Pral3976g00009 464 Gene3D Classic Zinc Finger 61 131 - -
Pral3976g00009 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Pral3976g00009 464 SUPERFAMILY beta-beta-alpha zinc fingers 80 178 IPR036236 -
Pral3976g00009 464 SMART c2h2final6 81 103 IPR013087 -
Pral3976g00009 464 SMART c2h2final6 123 153 IPR013087 -
Pral3976g00009 464 SMART c2h2final6 158 178 IPR013087 -
Pral3976g00009 464 MobiDBLite consensus disorder prediction 315 340 - -
Pral3976g00009 464 MobiDBLite consensus disorder prediction 1 65 - -
Pral3976g00009 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 437 IPR031140 -
Pral3976g00009 464 MobiDBLite consensus disorder prediction 9 53 - -
Pral3976g00009 464 FunFam protein indeterminate-domain 12-like 60 129 - -
Pral3976g00009 464 MobiDBLite consensus disorder prediction 315 337 - -
Pral3976g00009 464 Gene3D Classic Zinc Finger 136 216 - -
Pral3976g00009 464 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00009 Pral-Chr3976 50376 52983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00009 7 312 IDZ Gene Family AT1G55110 58.788 8.95e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3976g00009 zf-C2H2_jaz 6.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00009 K25870 - vvi:100257789 505.368