Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3976g00002 ATGACTCCTGCTGCTATGAACCCATCAAGCCCTTTCCTTCTCAGGGATCAAATAGAAGATCAAAACCAACTCTTCGTTTCTCCTCTTAATCGGGATTCAGCTAATTCTCTCTCATCATGTCCTAGCTTCTTCCGCTTACTTGATCAAACACAGACTAGAGAAACCCGCAGTGAGTTAAGACATGATCAAGAGGAAGCTGGACTGATGCTGCACGGAGGATCAAGCAGTCACCAAGTTTGGAATTCACCCTTTAATTCACGCCAGCCTCAACAAGTCAAGGATGACCGAAGAAACGTGTGTGGCGGCTATAAAGAGGAGGATGAGGAGGAAGAAAGCAAAAGCGGGTACGAGTCTGCAGAATGGATGCCTTCTAAGATAAGGTTGATGCGAAAGATGATGATCCCCAATACTAGTCATCCTGTCCCTCGTAAAGAATCGAATATCACTCCAAATACCCAAACTCGAGAGCATCAGAAAACCCAAACCCATAAAAGCCCTCCTAACCACAGAAATAACACCACCACTACTAGGGTTTGCGCCGACTGTAACACAACCAGTACCCCACTTTGGAGGGGGGGCCCAAAAGGTCCAAAGTCACTCTGCAATGCGTGTGGGATTAGGCAGAGGAAGGCGAGAAGGGCATTAATGGCGGAAGCTGGAAATGGTGTAGTTAGTTGCAGATTGAATAGCAAGGAGAAGAGGGCTCGCACAAACAATTTTGCAGCATTAAAGAATAAGTGCAAGGCCACTGCTGCAGGCAGCGCAGGAATGCCTGATGAGGGAGAAAGGAAGAATATTGGTTTGACGGATTTGGCATATAGTTTGAGGAACAACGTGTCGGTGGTCGAGCAAGTGTTTCCTGCGGATGAAGTAGCTCAAGCGGCGCTGCTTCTTATGGATTTATCTTATGCCTCTATTCCTGTTTAG 927 0.4693 MTPAAMNPSSPFLLRDQIEDQNQLFVSPLNRDSANSLSSCPSFFRLLDQTQTRETRSELRHDQEEAGLMLHGGSSSHQVWNSPFNSRQPQQVKDDRRNVCGGYKEEDEEEESKSGYESAEWMPSKIRLMRKMMIPNTSHPVPRKESNITPNTQTREHQKTQTHKSPPNHRNNTTTTRVCADCNTTSTPLWRGGPKGPKSLCNACGIRQRKARRALMAEAGNGVVSCRLNSKEKRARTNNFAALKNKCKATAAGSAGMPDEGERKNIGLTDLAYSLRNNVSVVEQVFPADEVAQAALLLMDLSYASIPV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3976g00002 308 CDD ZnF_GATA 178 210 IPR000679 GO:0006355|GO:0043565
Pral3976g00002 308 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 303 - -
Pral3976g00002 308 Pfam GATA zinc finger 179 212 IPR000679 GO:0006355|GO:0043565
Pral3976g00002 308 MobiDBLite consensus disorder prediction 140 156 - -
Pral3976g00002 308 MobiDBLite consensus disorder prediction 136 173 - -
Pral3976g00002 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 225 - -
Pral3976g00002 308 ProSitePatterns GATA-type zinc finger domain. 179 204 IPR000679 GO:0006355|GO:0043565
Pral3976g00002 308 ProSiteProfiles GATA-type zinc finger domain profile. 173 209 IPR000679 GO:0006355|GO:0043565
Pral3976g00002 308 SMART GATA_3 173 225 IPR000679 GO:0006355|GO:0043565
Pral3976g00002 308 Gene3D - 173 249 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3976g00002 Pral-Chr3976 15769 17679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3976g00002 114 306 C2C2-Gata Transcription Factor Family AT4G26150 36.036 1.23e-22 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral3976g00002 GATA 6.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3976g00002 - - pcin:129298038 431.795