Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3973g00002 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTTAAGAGAGGCCCTTGGTCACCCGAAGAAGACGCTACTCTCAGGACTTATGTCCAAACTCATGGCACTGGTGGTAATTGGATTGCATTGCCCCGTAAAGCAGGCCTTCGGAGGTGTGGCAAGAGCTGCCGTCTGCGGTGGCTCAATTATCTCAGGCCAGACATCAAACATGGAGGCTTTACTGAAGAAGAAGACAACATCATTTGTACCCTTTACGGGCAAATGGGAAGCAGATGGTCTGCCATAGCCTCTCAGCTTCCTGGCAGAACAGACAATGACGTGAAAAACTACTGGAACACCAAGTTAAAGAAGAAGCTAATGACAGGAAAAGTGAACCTCAAAACAGTGACCGACACTCACACTACTACTCTTCCTCCCACCCCATTACTACTGACTCATAATGTTCAAATCCAAAACCAAAATTGCGATTTTCCTACTGCTTCGCAAAACCTCACTTCATCATCTTCCTCAACTCTGCCTATCCTGACGGACGCTAATTCTGGGTTTCACATTAACACTTATCACGGCATGATCACTTTTGACCCAACTCAGTTATACAGTCCAGGGTTCACTGATGTCTCAGAAATCAACGCAAGCTCAAGCATGATGTCCTTGTCTCAGGAAGGTTCAAGCATTTCGGATTCATCTTTAATTGCAACAACGGAGAACAAATGTCTATCGCTGCCGGATCATGCTGGCGGCGGCGACGAAGCAACCCAATTGCTAATGAACTTGGGGTTTGGATTTCCCTCTGACTTCGTCAATAGTGGCTTTTACACCTCCCAAGAGAAAGTTGGTGAATTCGCTTCAAGTTTCTATCCTCACGAGTTGGTTGATTTTGGCTATGCTGACATGAAGCCGCTGGGACGAAATTGA 909 0.4642 MGRAPCCDKANVKRGPWSPEEDATLRTYVQTHGTGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYGQMGSRWSAIASQLPGRTDNDVKNYWNTKLKKKLMTGKVNLKTVTDTHTTTLPPTPLLLTHNVQIQNQNCDFPTASQNLTSSSSSTLPILTDANSGFHINTYHGMITFDPTQLYSPGFTDVSEINASSSMMSLSQEGSSISDSSLIATTENKCLSLPDHAGGGDEATQLLMNLGFGFPSDFVNSGFYTSQEKVGEFASSFYPHELVDFGYADMKPLGRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3973g00002 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pral3973g00002 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pral3973g00002 302 FunFam Transcription factor RAX3 70 135 - -
Pral3973g00002 302 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pral3973g00002 302 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pral3973g00002 302 CDD SANT 71 113 IPR001005 -
Pral3973g00002 302 PANTHER OS09G0431300 PROTEIN 1 222 - -
Pral3973g00002 302 Gene3D - 7 68 - -
Pral3973g00002 302 Gene3D - 69 134 - -
Pral3973g00002 302 FunFam Transcription factor RAX3 7 68 - -
Pral3973g00002 302 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pral3973g00002 302 CDD SANT 16 62 IPR001005 -
Pral3973g00002 302 SMART sant 13 64 IPR001005 -
Pral3973g00002 302 SMART sant 67 115 IPR001005 -
Pral3973g00002 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pral3973g00002 302 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3973g00002 Pral-Chr3973 31450 32998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3973g00002 1 118 MYB Transcription Factor Family AT5G65790 82.203 1.84e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3973g00002 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3973g00002 K09422 - gmx:100789985 353.599