Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3972g00012 ATGGGTTTTGCCGATATGTCTAATACGGGCCTCCGCCTCGGCCTCGGCCTCGGCCTCGGTCTTCCCCATGAGTCAGAGAATTGCCGCGGAGAAATCCGACAGAAGAAAGAAGAGGATCCGTACAAATGTGACCAGAAGGCGTACCCGTCTCTTACTTTAGGACCGCCTGATGATCAGGACGCCAATCGGCAGCTTCCTCCGACCAAGACTGAATCTGTTCATTTCCATGCAATATCCTCTTCTTCTCCCAGCGCCGCCTCTTCCTTCTCCAACTCCTCCAGCATCAAGAGGGAGAATAAGGAGTTTGTCGGCGACGAGCTTGATTTGGAAGTAGAGAACAAGGTTAATCCCTCCAGGGCTGGCGTCGACGTGGACGACGAGGGTAATCCCAGGAAGAAACTCAGGCTCACCAAAGAACAATCTGCTGTTTTGGAGGACAGCTTCAGAGACCACTCTACTCTCAATCCCAAGCAAAAGCAAGAATTGGCAAGAAAGCTAAACCTGCGTGCGAGACAAGTGGAGGTTTGGTTCCAAAACAGGAGAGCTAGGACAAAACTGAAACAAACGGAAGTTGACTGTGAGGTACTCAAGAAGTGCTGCGAAACGCTAACGGAAGAGAACAAGAGGCTGGAAAAGGAGTTGCAAGAACTGAGATCAATGAAAACGACGTCGCAGGGACCCTTGTATATGCAGCTTCCGGCAGCCACCCTCACCTTATGCCCTTCTTGTGAGAGGATTTGCGGCGGAGGCGGCGGCTCCCCCGCCAATGGCTCTCCTGCTACTACCGCCTTCCTGATCGGATCAAAGGCCCATCACTTGTACAAAAGCAGCTACCCATTCACCCACTCATCCGCAGCTTGCTAG 864 0.5243 MGFADMSNTGLRLGLGLGLGLPHESENCRGEIRQKKEEDPYKCDQKAYPSLTLGPPDDQDANRQLPPTKTESVHFHAISSSSPSAASSFSNSSSIKRENKEFVGDELDLEVENKVNPSRAGVDVDDEGNPRKKLRLTKEQSAVLEDSFRDHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCEVLKKCCETLTEENKRLEKELQELRSMKTTSQGPLYMQLPAATLTLCPSCERICGGGGGSPANGSPATTAFLIGSKAHHLYKSSYPFTHSSAAC 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3972g00012 287 MobiDBLite consensus disorder prediction 14 95 - -
Pral3972g00012 287 SUPERFAMILY Homeodomain-like 129 195 IPR009057 -
Pral3972g00012 287 MobiDBLite consensus disorder prediction 63 95 - -
Pral3972g00012 287 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
Pral3972g00012 287 FunFam Homeobox-leucine zipper protein 18 117 192 - -
Pral3972g00012 287 MobiDBLite consensus disorder prediction 26 44 - -
Pral3972g00012 287 CDD homeodomain 130 188 IPR001356 GO:0003677
Pral3972g00012 287 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Pral3972g00012 287 Gene3D - 124 192 - -
Pral3972g00012 287 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Pral3972g00012 287 SMART HOX_1 129 191 IPR001356 GO:0003677
Pral3972g00012 287 Coils Coil 193 223 - -
Pral3972g00012 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 252 - -
Pral3972g00012 287 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Pral3972g00012 287 SMART halz 187 232 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3972g00012 Pral-Chr3972 69849 71478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3972g00012 1 287 Homeobox Transcription Factor Family AT2G22800 50.333 1.92e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral3972g00012 Homeodomain 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3972g00012 K09338 - gmx:100807072 320.087