Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00099 ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACGAGAGACAATCCTGAATTGCCCGTCATCAGGTTTGAGCACCAGTGTCTCTGAAATCGCAGTTAGCTCTGTGTCTATGCCCAAGCCTCCTGTTGTGACTAATCCTTTTCTTGGGTCTTCTTCCACCTGGGATCCTCTTGTTTCCCTGAGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGTGAGTTTGGCAGTTCATCTTACCCTCTTGTGTTGGAAAATCAGGGAATGAATAGCACCTCTCACCTTGTTCAATATATGTCCGACTCTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCCCAACATGGGTGTTCTGATTTAGCTAATACAAGGTATGGCCCAAGTTATAACCAAAACGAGGAGGCAGCCATGAAAAGGGCTCCATTAAATGGTTCACAATCTCAGCTTGAGGATCCAGCTCCTGACGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTTGATCACAACCCTACGTTCAGTCCAAACAAGAATGTTGAAGGGGAACCAATGATGGATTCTTCTGGGAAGAGCTCCGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGGGCTCGAAGAGGTCAGGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTCTCTCTATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATGTAGACCGGATCCTATCCAAAGATATTCTTCAGTCGCGCATCGCAAATGGGACTATTGGTGGATATGGTATGAACTCCTCTCACTCGTTCCCTGGTGGAAGTTTTCAGGGAACCCTTCCAGGACCAGGCATACCCAACACATCATCACCATTCCCTCCTTTGCCTCAGAGTGTTTTGGAGCATGAGTTCCAAAACTTGTATGGAATGGGATACGATTCTAATACACCTCTTGACAACGCAGGACCCAGTGGGAGGTTGAAAACAGAGTTGTAA 1278 0.4554 MGGHENAMGFQHGRETILNCPSSGLSTSVSEIAVSSVSMPKPPVVTNPFLGSSSTWDPLVSLSQTQTFGGSSMVSHSEFGSSSYPLVLENQGMNSTSHLVQYMSDSNFAVPSYASGSFSEMVGSFPQHGCSDLANTRYGPSYNQNEEAAMKRAPLNGSQSQLEDPAPDEGATGSAPNGSRRKRGLDHNPTFSPNKNVEGEPMMDSSGKSSDGAKEQDEKKQKVEQNNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIANGTIGGYGMNSSHSFPGGSFQGTLPGPGIPNTSSPFPPLPQSVLEHEFQNLYGMGYDSNTPLDNAGPSGRLKTEL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00099 425 FunFam Basic helix-loop-helix transcription factor 261 333 - -
Pral3970g00099 425 SMART finulus 270 320 IPR011598 GO:0046983
Pral3970g00099 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 332 IPR036638 GO:0046983
Pral3970g00099 425 CDD bHLH_AtBPE_like 254 339 - -
Pral3970g00099 425 MobiDBLite consensus disorder prediction 210 226 - -
Pral3970g00099 425 MobiDBLite consensus disorder prediction 227 251 - -
Pral3970g00099 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Pral3970g00099 425 Gene3D - 261 335 IPR036638 GO:0046983
Pral3970g00099 425 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 152 359 IPR024097 GO:0006355
Pral3970g00099 425 Pfam Helix-loop-helix DNA-binding domain 267 315 IPR011598 GO:0046983
Pral3970g00099 425 MobiDBLite consensus disorder prediction 153 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00099 Pral-Chr3970 674320 678446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00099 1 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.705 8.23e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3970g00099 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00099 - - gmx:100801930 587.415