Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral3970g00098 | ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACGAGAGACAATCCTGAATTGCCCGTCATCAGGTTTGAGCACCAGTGTCTCTGAAATCGCAGTTAGCTCTGTGTCTATGCCCAAGCCTCCTGTTGTGACTAATCCTTTTCTTGGGTCTTCTTCCACCTGGGATCCTCTTGTTTCCCTGAGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGTGAGTTTGGCAGTTCATCTTACCCTCTTGTGTTGGAAAATCAGGGAATGAATAGCACCTCTCACCTTGTTCAATATATGTCCGACTCTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCCCAACATGGGTGTTCTGATTTAGCTAATACAAGGTATGGCCCAAGTTATAACCAAAACGAGGAGGCAGCCATGAAAAGGGCTCCATTAAATGGTTCACAATCTCAGCTTGAGGATCCAGCTCCTGACGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTTGATCACAACCCTACGTTCAGTCCAAACAAGGTAGATCAAGCATTCTACTCAGTCTCAAATGTTGAAGGGGAACCAATGATGGATTCTTCTGGGAAGAGCTCCGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGGGCTCGAAGAGGTCAGGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTCTCTCTATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATGTAGACCGGATCCTATCCAAAGATATTCTTCAGTCGCGCATCGCAAATGGGACTATTGGTGGATATGGTATGAACTCCTCTCACTCGTTCCCTGGTGGAAGTTTTCAGGGAACCCTTCCAGGACCAGGCATACCCAACACATCATCACCATTCCCTCCTTTGCCTCAGAGTGTTTTGGAGCATGAGTTCCAAAACTTGTATGGAATGGGATACGATTCTAATACACCTCTTGACAACGCAGGACCCAGTGGGAGGTTGAAAACAGAGTTGTAA | 1305 | 0.4544 | MGGHENAMGFQHGRETILNCPSSGLSTSVSEIAVSSVSMPKPPVVTNPFLGSSSTWDPLVSLSQTQTFGGSSMVSHSEFGSSSYPLVLENQGMNSTSHLVQYMSDSNFAVPSYASGSFSEMVGSFPQHGCSDLANTRYGPSYNQNEEAAMKRAPLNGSQSQLEDPAPDEGATGSAPNGSRRKRGLDHNPTFSPNKVDQAFYSVSNVEGEPMMDSSGKSSDGAKEQDEKKQKVEQNNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIANGTIGGYGMNSSHSFPGGSFQGTLPGPGIPNTSSPFPPLPQSVLEHEFQNLYGMGYDSNTPLDNAGPSGRLKTEL | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral3970g00098 | 434 | Gene3D | - | 270 | 344 | IPR036638 | GO:0046983 | |
| Pral3970g00098 | 434 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 273 | 323 | IPR011598 | GO:0046983 | |
| Pral3970g00098 | 434 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 271 | 341 | IPR036638 | GO:0046983 | |
| Pral3970g00098 | 434 | FunFam | Basic helix-loop-helix transcription factor | 270 | 342 | - | - | |
| Pral3970g00098 | 434 | MobiDBLite | consensus disorder prediction | 153 | 263 | - | - | |
| Pral3970g00098 | 434 | Pfam | Helix-loop-helix DNA-binding domain | 276 | 324 | IPR011598 | GO:0046983 | |
| Pral3970g00098 | 434 | MobiDBLite | consensus disorder prediction | 236 | 260 | - | - | |
| Pral3970g00098 | 434 | CDD | bHLH_AtBPE_like | 263 | 348 | - | - | |
| Pral3970g00098 | 434 | SMART | finulus | 279 | 329 | IPR011598 | GO:0046983 | |
| Pral3970g00098 | 434 | MobiDBLite | consensus disorder prediction | 219 | 235 | - | - | |
| Pral3970g00098 | 434 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 161 | 368 | IPR024097 | GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral3970g00098 | Pral-Chr3970 | 674302 | 678446 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral3970g00098 | 1 | 434 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G10120 | 41.309 | 8.19e-83 | 257 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Pral3970g00098 | HLH | 4.6e-06 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral3970g00098 | - | - | gmx:100801930 | 579.711 |