Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00097 ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACGAGAGACAATCCTGAATTGCCCGTCATCAGGTTTGAGCACCAGTGTCTCTGAAATCGCAGTTAGCTCTGTGTCTATGCCCAAGCCTCCTGTTGTGACTAATCCTTTTCTTGGGTCTTCTTCCACCTGGGATCCTCTTGTTTCCCTGAGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGTGAGTTTGGCAGTTCATCTTACCCTCTTGTGTTGGAAAATCAGGGAATGAATAGCACCTCTCACCTTGTTCAATATATGTCCGACTCTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCCCAACATGGGTGTTCTGATTTAGCTAATACAAGGTATGGCCCAAGTTATAACCAAAACGAGGAGGCAGCCATGAAAAGGGCTCCATTAAATGGTTCACAATCTCAGCTTGAGGATCCAGCTCCTGACGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTTGATCACAACCCTACGTTCAGTCCAAACAAGGTAGATCAAGCATTCTACTCAGTCTCAAATGTTGAAGGGGAACCAATGATGGATTCTTCTGGGAAGAGCTCCGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGGGCTCGAAGAGGTCAGGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGATTCTTCAGTCGCGCATCGCAAATGGGACTATTGGTGGATATGGTATGAACTCCTCTCACTCGTTCCCTGGTGGAAGTTTTCAGGGAACCCTTCCAGGACCAGGCATACCCAACACATCATCACCATTCCCTCCTTTGCCTCAGAGTGTTTTGGAGCATGAGTTCCAAAACTTGTATGGAATGGGATACGATTCTAATACACCTCTTGACAACGCAGGACCCAGTGGGAGGTTGAAAACAGAGTTGTAA 1233 0.4566 MGGHENAMGFQHGRETILNCPSSGLSTSVSEIAVSSVSMPKPPVVTNPFLGSSSTWDPLVSLSQTQTFGGSSMVSHSEFGSSSYPLVLENQGMNSTSHLVQYMSDSNFAVPSYASGSFSEMVGSFPQHGCSDLANTRYGPSYNQNEEAAMKRAPLNGSQSQLEDPAPDEGATGSAPNGSRRKRGLDHNPTFSPNKVDQAFYSVSNVEGEPMMDSSGKSSDGAKEQDEKKQKVEQNNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEILQSRIANGTIGGYGMNSSHSFPGGSFQGTLPGPGIPNTSSPFPPLPQSVLEHEFQNLYGMGYDSNTPLDNAGPSGRLKTEL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00097 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 323 IPR011598 GO:0046983
Pral3970g00097 410 FunFam Basic helix-loop-helix transcription factor 270 339 - -
Pral3970g00097 410 CDD bHLH_AtBPE_like 263 335 - -
Pral3970g00097 410 SMART finulus 279 329 IPR011598 GO:0046983
Pral3970g00097 410 MobiDBLite consensus disorder prediction 153 263 - -
Pral3970g00097 410 Gene3D - 270 337 IPR036638 GO:0046983
Pral3970g00097 410 Coils Coil 313 333 - -
Pral3970g00097 410 MobiDBLite consensus disorder prediction 236 260 - -
Pral3970g00097 410 MobiDBLite consensus disorder prediction 219 235 - -
Pral3970g00097 410 Pfam Helix-loop-helix DNA-binding domain 276 324 IPR011598 GO:0046983
Pral3970g00097 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 333 IPR036638 GO:0046983
Pral3970g00097 410 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 161 336 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00097 Pral-Chr3970 674160 678446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00097 1 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 36.281 7.26e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3970g00097 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00097 - - gmx:100801930 520.39