Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00096 ATGGGTGGTCATGAAAATGCCATGGGGTTTCAACATGGACGAGAGACAATCCTGAATTGCCCGTCATCAGGTTTGAGCACCAGTGTCTCTGAAATCGCAGTTAGCTCTGTGTCTATGCCCAAGCCTCCTGTTGTGACTAATCCTTTTCTTGGGTCTTCTTCCACCTGGGATCCTCTTGTTTCCCTGAGTCAGACTCAAACTTTTGGAGGCTCTTCCATGGTTTCTCACAGTGAGTTTGGCAGTTCATCTTACCCTCTTGTGTTGGAAAATCAGGGAATGAATAGCACCTCTCACCTTGTTCAATATATGTCCGACTCTAATTTCGCTGTTCCTTCCTATGCAAGTGGAAGCTTCTCCGAAATGGTTGGCTCTTTTCCCCAACATGGGTGTTCTGATTTAGCTAATACAAGGTATGGCCCAAGTTATAACCAAAACGAGGAGGCAGCCATGAAAAGGGCTCCATTAAATGGTTCACAATCTCAGCTTGAGGATCCAGCTCCTGACGAAGGAGCCACAGGATCTGCACCTAATGGAAGTAGAAGAAAACGAGGGCTTGATCACAACCCTACGTTCAGTCCAAACAAGGTAGATCAAGCATTCTACTCAGTCTCAAATGTTGAAGGGGAACCAATGATGGATTCTTCTGGGAAGAGCTCCGATGGGGCAAAAGAACAAGATGAGAAGAAACAAAAGGTTGAGCAAAACAATACTAGTGCAGATTTGCGTGGTAAGCAATCATCAAAGCAAGCTAAAGACAACTCTCAAAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGGGCTCGAAGAGGTCAGGCTACGAACAGTCATAGCCTTGCAGAAAGGGTAAGAAGAGAGAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGGAAAGCAGTGATGCTGGATGAGATTATTAACTATGTGCAATCGCTGCAGCAACAGGTTGAGTTTCTCTCTATGAAACTTGCCACCGTGAACCCAGAACTGAATTTTGATGTAGACCGGATCCTATCCAAAGATATTCTTCAGTCGCGCATCGCAAATGGGACTATTGGTGGATATGGTATGAACTCCTCTCACTCGTTCCCTGGTGGAAGTTTTCAGGGAACCCTTCCAGGACCAGGCATACCCAACACATCATCACCATTCCCTCCTTTGCCTCAGGACCCAGTGGGAGGTTGA 1218 0.4589 MGGHENAMGFQHGRETILNCPSSGLSTSVSEIAVSSVSMPKPPVVTNPFLGSSSTWDPLVSLSQTQTFGGSSMVSHSEFGSSSYPLVLENQGMNSTSHLVQYMSDSNFAVPSYASGSFSEMVGSFPQHGCSDLANTRYGPSYNQNEEAAMKRAPLNGSQSQLEDPAPDEGATGSAPNGSRRKRGLDHNPTFSPNKVDQAFYSVSNVEGEPMMDSSGKSSDGAKEQDEKKQKVEQNNTSADLRGKQSSKQAKDNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIANGTIGGYGMNSSHSFPGGSFQGTLPGPGIPNTSSPFPPLPQDPVGG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00096 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 323 IPR011598 GO:0046983
Pral3970g00096 405 FunFam Basic helix-loop-helix transcription factor 270 342 - -
Pral3970g00096 405 MobiDBLite consensus disorder prediction 153 263 - -
Pral3970g00096 405 Pfam Helix-loop-helix DNA-binding domain 276 324 IPR011598 GO:0046983
Pral3970g00096 405 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 161 365 IPR024097 GO:0006355
Pral3970g00096 405 MobiDBLite consensus disorder prediction 389 405 - -
Pral3970g00096 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 341 IPR036638 GO:0046983
Pral3970g00096 405 Gene3D - 270 344 IPR036638 GO:0046983
Pral3970g00096 405 MobiDBLite consensus disorder prediction 236 260 - -
Pral3970g00096 405 MobiDBLite consensus disorder prediction 374 388 - -
Pral3970g00096 405 CDD bHLH_AtBPE_like 263 348 - -
Pral3970g00096 405 SMART finulus 279 329 IPR011598 GO:0046983
Pral3970g00096 405 MobiDBLite consensus disorder prediction 219 235 - -
Pral3970g00096 405 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00096 Pral-Chr3970 674159 678446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00096 1 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.441 2.67e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3970g00096 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00096 - - gmx:100801930 526.939