Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00095 ATGAAGTCTATGAATGATAGCAGGAACAACGACGGGAGTGAGAATAATAATAGTAATCAAAACTGGTTGGGGTTCTCTCTGTCACCCCACATGAAAATGGAGCACTCTCCTGGCCCTCCCCTCCATCATCACGATCACCATCAACCTCAGCCTTCTGCTGCTGCTGTTTCTAGCTCTGTTCCGACAAGCTTTTGTTTGTCGCCTTCTCAGCTCAGCACTTACGGAATATGTTATGGTGCACCGGAGAACGCAGGCTTTCATTCTCCGTTGACCGTCATGCCTCTCAAGTCCGATGGCTCCCTCTGTATAATGGAAGCGCTCACTAGATCACAAACTCAAGTGATGATGCCGAATTCGTCTCCGAAACTGGAGGACTTTCTAGGTGGTGCAACTATGGGGACTCACGATGCAACTTTGAGCCTCGACAGCATCTACTATGGCGCTCAGAATGCACAGACTCAAGCCCACAGAGATCATTCTCTTGACTTTCTTTCGGAGCCTTTCAGACAGCAAGACCCCGTGCCTGCGCAGGCACATCCTTATTATTCTGGAATCGCTTGCCATGCTATTTATCCATCGCCATTGGAGCAACAAAGCAAGGACCCCCATATGCAACCAATGTCCGTGGAAGGCATGGCTTGTCTGAAAAACTGGGTGGTTCCCGGCAGGGAATATTCTGCTCAACAAGGTTTAGAGCAGAAAAAGGATGGACGCATGGAGGATGATGGCGGAGCATCCGGGTCAGTCGGTAAAGTTGGGTGTGGAGATTTACAGTCCCTCGGCTTATCCGTGAGCCCTGGTTCGCAGTCTAGCTGTGTAACTGCTCCACAGCAGATTTCGCCTTCTGCGAGTGACATGGTAGCAATGGAAGCCAAGAAGAGAGGGCCTGGAAAGTTGGGCCAGAAACAACCTGTGCATAGGAAATCGATCGACACTTTTGGCCAGAGAACGTCTCAGTTCCGAGGCGTCACTAGGCACCGGTGGACTGGCAGATATGAAGCGCATTTATGGGATAACAGTTGTAAGAAGGAAGGTCAGACGAGGAAAGGAAGACAAGTTTATTTGGGGGGCTATGACATGGAAGAGAAAGCTGCAAGAGCCTACGATCTTGCAGCCCTCAAGTACTGGGGAGCCTCAACCCATATTAACTTTCCGTTGGAAAATTACCAGGTTGAACTAGAAGAAATGAAAAACATGAGCAGGCAAGAATACGTTGCCCACTTGAGAAGAAAAAGCAGTGGTTTTTCCAGAGGAGCTTCAATGTATAGAGGAGTGACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGAAACAAGGATCTTTATCTTGGAACATTCAGCACTCAGGAGGAAGCAGCTGAAGCATATGACATAGCTGCAATCAAGTTCCGTGGTGTGAACGCAGTGACGAACTTCGACATATCTAGGTACGATGTGGACAGGATCATGGCCAGCAATACACTTCTGGCTGGTGAGCTGGCTCGACGAAATAAAGATAGCGAACCAAGAATAGAAGCCCTAGAGTACAATAACCATAGCAATGGGGAAGCGGTTCTAGCCCAGAGGAACAAGAACGACACCGGTTCAGATTGGAAGATGTTGTATCCTCCAAATAGCTGTGATCAGAAAACCGGGAACTGCGGAAATTACAGGAATTCAGCCATATCTGCGTCCCTACAGGATCTCATTGGGATTGACTCTGCGAGCTCAGGTCAGGCCATGCTGGAGGACACTACAAAGATAGGCACTCATTTTTCAAACCCATCCTCGCTGGTCACGAGCCTAAGCAGCTCAAGAGAGGGAAGTCCGGATAAAGCTGGCCCCACCATTCTGTTTCCAAAGCCTCCTCCAATAGCTTCAAAGATTGTTAGCCCCATAGGTAGTGGAGTTAGTTCGTGGTTCCCTTCGGCAGCATCTCAGACGTTGAGGCCAGCGTCTGCTCTTTCAATGTCTCACTTGCCAGTATTTGCTGCTTGGAACGATAGTTGA 2007 0.4888 MKSMNDSRNNDGSENNNSNQNWLGFSLSPHMKMEHSPGPPLHHHDHHQPQPSAAAVSSSVPTSFCLSPSQLSTYGICYGAPENAGFHSPLTVMPLKSDGSLCIMEALTRSQTQVMMPNSSPKLEDFLGGATMGTHDATLSLDSIYYGAQNAQTQAHRDHSLDFLSEPFRQQDPVPAQAHPYYSGIACHAIYPSPLEQQSKDPHMQPMSVEGMACLKNWVVPGREYSAQQGLEQKKDGRMEDDGGASGSVGKVGCGDLQSLGLSVSPGSQSSCVTAPQQISPSASDMVAMEAKKRGPGKLGQKQPVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGASTHINFPLENYQVELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVDRIMASNTLLAGELARRNKDSEPRIEALEYNNHSNGEAVLAQRNKNDTGSDWKMLYPPNSCDQKTGNCGNYRNSAISASLQDLIGIDSASSGQAMLEDTTKIGTHFSNPSSLVTSLSSSREGSPDKAGPTILFPKPPPIASKIVSPIGSGVSSWFPSAASQTLRPASALSMSHLPVFAAWNDS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00095 668 ProSiteProfiles AP2/ERF domain profile. 421 479 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 CDD AP2 318 385 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 MobiDBLite consensus disorder prediction 597 619 - -
Pral3970g00095 668 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 113 557 - -
Pral3970g00095 668 SMART rav1_2 319 391 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 SMART rav1_2 421 485 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 CDD AP2 420 481 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 Pfam AP2 domain 319 377 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 Pfam AP2 domain 422 471 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 FunFam AP2-like ethylene-responsive transcription factor ANT 318 387 - -
Pral3970g00095 668 SUPERFAMILY DNA-binding domain 420 481 IPR016177 GO:0003677
Pral3970g00095 668 FunFam AP2-like ethylene-responsive transcription factor 420 481 - -
Pral3970g00095 668 MobiDBLite consensus disorder prediction 1 26 - -
Pral3970g00095 668 SUPERFAMILY DNA-binding domain 318 387 IPR016177 GO:0003677
Pral3970g00095 668 PRINTS Ethylene responsive element binding protein signature 320 331 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 PRINTS Ethylene responsive element binding protein signature 461 481 IPR001471 GO:0003700|GO:0006355
Pral3970g00095 668 Gene3D AP2/ERF domain 421 481 IPR036955 GO:0003700|GO:0006355
Pral3970g00095 668 Gene3D AP2/ERF domain 318 387 IPR036955 GO:0003700|GO:0006355
Pral3970g00095 668 MobiDBLite consensus disorder prediction 1 55 - -
Pral3970g00095 668 ProSiteProfiles AP2/ERF domain profile. 319 385 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00095 Pral-Chr3970 660573 664755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00095 11 506 AP2-EREBP Transcription Factor Family AT4G37750 53.333 1.13e-159 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral3970g00095 AP2 7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00095 K09285 - qsa:O6P43_015953 899.042