Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00093 ATGGATTCTGATCAAGCCAAGCTGTTTGTGGGTGGCATTTCCAGGGACACTACCGAAGATGTTTTGAAAGACCACTTCGCCAAGTACGGCTCTGTTCTGGGTTCCACAATTTCGTTGGACCGCAACACCAAAATTCCTAGAGGCTTTGGCTTCGTTAGGTTCTCCGACGTTTCAGCGGCTGATAAAGCCCTTCAAGACACGCATGTTATACTGGGAAGAACGGTAGAAGTGAAGAAAGCAATACCTAGAAGTGAACACCAACATCAAAACCTACCCCAGAGTAGAGGCACGAGTAACTGTAGTAATTATGACAGTAGCAGCGACCACGTTAGCACCAAAAAGGTTTTTGTAGGAGGCCTATCAGCTGGTATATCGGAGGATGAGTTTAAGCGGTATTTCGAGAGATTTGGTAGAATAACAGATGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGTTTCATTACATTTGATTCGGAAGAATCTGTTGAAAGTGTGATGATGAAAAGCTTCCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCAAAAGACGGGAATCATGGTTATGATGGTGTTAATAGAATGAGATACAAGAATGGAAGAGGAGCCCCTAAAACTTCCCCTCAGTATAGTCCTAGGTACATTCCCCCTGCGTTTGCACCTCTTCCCTGGTACAGTGGGGATGGATTGTATTTTTATGGATCTAACATGTATGGGTGCTGGCTCCCTATGGGAGGGTATGGCTGCAATGGATCTGCAGTTCCATTTGATGTTCCTAGGAATTTCTGGTATGGTCCTCCGGTAGCAACTGCTCAGACATGCCAGGTGCCTTATGCTTCTCCAACCCACGCATTTGGGAGTGTTAGGGGTGTACTCGGTACTGAAACTAGGGGCTACAATGGCATCATGGGATCTGCAGCGAGTTTTAAATCCAATCAGGTTTTCAGTGCCAATGGATTTCTACCGGCTGATGTTACATCATCATCTCCTAAGATTGAAGAGTTGAAGCAGGAAGTGGAGTCTCTAAGTTTGAAAGAAACCAGTGCTGACATCTAG 1080 0.4602 MDSDQAKLFVGGISRDTTEDVLKDHFAKYGSVLGSTISLDRNTKIPRGFGFVRFSDVSAADKALQDTHVILGRTVEVKKAIPRSEHQHQNLPQSRGTSNCSNYDSSSDHVSTKKVFVGGLSAGISEDEFKRYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVESVMMKSFHDLNGRQVEVKRAVPKDGNHGYDGVNRMRYKNGRGAPKTSPQYSPRYIPPAFAPLPWYSGDGLYFYGSNMYGCWLPMGGYGCNGSAVPFDVPRNFWYGPPVATAQTCQVPYASPTHAFGSVRGVLGTETRGYNGIMGSAASFKSNQVFSANGFLPADVTSSSPKIEELKQEVESLSLKETSADI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00093 359 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 315 - -
Pral3970g00093 359 Gene3D - 93 218 IPR012677 -
Pral3970g00093 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Pral3970g00093 359 CDD RRM2_Hrp1p 114 191 - -
Pral3970g00093 359 Gene3D - 1 91 IPR012677 -
Pral3970g00093 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pral3970g00093 359 MobiDBLite consensus disorder prediction 81 105 - -
Pral3970g00093 359 SUPERFAMILY RNA-binding domain, RBD 104 210 IPR035979 GO:0003676
Pral3970g00093 359 SUPERFAMILY RNA-binding domain, RBD 3 99 IPR035979 GO:0003676
Pral3970g00093 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pral3970g00093 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Pral3970g00093 359 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pral3970g00093 359 SMART rrm1_1 114 186 IPR000504 GO:0003723
Pral3970g00093 359 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00093 Pral-Chr3970 646262 648138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00093 8 251 Eukaryotic Initiation Factors Gene Family AT2G36660 23.715 9.91e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00093 K14411 - gmx:100816822 467.618