Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00088 ATGTTCTTCCATGACGACGTCGTCCGATCCCTCCAGTTCCCTTCATGCACGCTTCAATCCTTGCTGACTCCAGGTGAGGTAGAGGAGTTATTGTCCCTCATTCGAGGCGAGGATCCGGCCAGTCCCAGCTCCGGTTCGCAAGCATCAACCCGGGCACTTTACTCGTTGGACGAGAGAAGGCGCAGGCGCATGCAGTCGAACAGGGAGTCAGCCCGGCGGTCCCGCTGGAGAAAGAAGAAGCATTTAGAGAACCTCACGAGCCAAGTGAACCGCCTAAAAACTGAAAACCGAGAACTCAAAAACCAGCTGGGCTTCACCCTTCACCAGCACGTCATAGTCTCCCTCGAGAACGCCCAACTAAGATCCGAATCCGAATTCCTCATGTCCCGGCTGTCGCATCTATATCGGGCTCTGGATACCACTCTAAGCCCCTAA 435 0.5494 MFFHDDVVRSLQFPSCTLQSLLTPGEVEELLSLIRGEDPASPSSGSQASTRALYSLDERRRRRMQSNRESARRSRWRKKKHLENLTSQVNRLKTENRELKNQLGFTLHQHVIVSLENAQLRSESEFLMSRLSHLYRALDTTLSP 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00088 144 SMART brlzneu 55 119 IPR004827 GO:0003700|GO:0006355
Pral3970g00088 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 43 140 - -
Pral3970g00088 144 MobiDBLite consensus disorder prediction 54 71 - -
Pral3970g00088 144 Gene3D - 57 110 - -
Pral3970g00088 144 FunFam BZIP transcription factor 57 108 - -
Pral3970g00088 144 Coils Coil 82 109 - -
Pral3970g00088 144 MobiDBLite consensus disorder prediction 39 53 - -
Pral3970g00088 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 57 103 IPR004827 GO:0003700|GO:0006355
Pral3970g00088 144 MobiDBLite consensus disorder prediction 36 80 - -
Pral3970g00088 144 Pfam bZIP transcription factor 59 103 IPR004827 GO:0003700|GO:0006355
Pral3970g00088 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 62 77 IPR004827 GO:0003700|GO:0006355
Pral3970g00088 144 SUPERFAMILY Leucine zipper domain 59 110 IPR046347 GO:0003700|GO:0006355
Pral3970g00088 144 CDD bZIP_plant_GBF1 64 110 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00088 Pral-Chr3970 602310 603189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00088 44 139 bZIP Transcription Factor Family AT2G18160 41.667 1.76e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral3970g00088 bZIP_1 9.8e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00088 - - gmx:102668006 148.673