Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00068 ATGCTGTGTGCTTGTTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCGCCGGAGTCCCTTGCTACAAGAGATTTCTCGGCCAGTGGGCTCTCTTCGAGGACTGGTGATTGGGAATCTAAATTTGATGACACCCAAGTAGATGAAGCTGAATCTACTCTTAAAGAAGCTCTCTCCTTGAACTACGAGGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATTTCAAAGAGGGAATTTCGATGCTGCCCTTCAAGTGTTTCAGGGGATTGACATTAAGGGTTTGACTCCAAGGATGATTAGGGCCATTTCTGAGAGAACCAAGCAAAGAAAACCACGTTCTAAGGCCGATCGCGTGCTTCCCTCTATAATGTCAATGCATTCAGTAAGCCTGCTTCTTGAGGCTATTCTTCTTAAAGCTAAATCATTGGAGGCACTCGGACGCTACACTGAGGCCGCAAAGGAATGCAAAGTAATTCTGGACACGGTTGATTCTGCACTACCAGCTGGAATGCCTCAAGGTTTTGGCGTAGATTGTAAACTGCAAGGGATGTTCCACCGAGCATTAGAGTTGCTTCCAGTACTTTGGACCAATGCAGGGTTACTAGATGAAGCTATCACTGCATATCGGCGGGCTCTGATCAAGCCATGGAATTTGGAGCCACAAAGGCTGGCCGCCATGCAGAAAGATTTAGCTGTCACGCTCCTCTATGGTGGTGTTGAAATGAGCCTTCCATCTCATTTGCATGTGTGGGGTGTAACAACGCCGAAGACTAACATTGAAGAAGCTGTACTGTTGTTACTAATACTCATGAGAAAGATAGCACTTCAGGAAATCGAATGGGATTCTGACCTATTAGATCATCTTGCATTTGCACTTTCAACTGTTGGGATGTTTGAGTCATTGGCAGATCATGTTGAGCAGATCCTTCCAGGTGTTTATAGTCGTGCTGAGAGGTGGTACTTTCTTGCCCTTTGTTATAGTGCTGCAGGACAGAATGAAACAGCATTGAACCTTCTAATGAAAGTTTGTGGTAGTTCCGAAGCAAAGCATATACCCCATTTTCCTTCCTTTTTATTAGGAGCAAAACTGTGTTCCCAAGATCCCAACCATGCCCATGAAGGCATTAAATTATCACGGAAAGTGATTGATCTAGCCAAGCATCAATGTGAACACTTTCAGGGTCAAGGTCACAAATTTCTTGGTGTTTGCTATGGGGCTGCAGCTAGAATTTCTCTACTGGATTCTGAAAGAGTTATATGTCAAAGAGAGTCTTTGAATTCCTTAAACCAAGCTGCTGTAATTGGAAATTGGGACCCTGAAGTGATATTCAGCCTTGGATTGGAAAATGCAGTTCAAAGAAATCTAGCGGCAGCTTATGAGAACGCCGTGATGTACTCAGATATGATTGTTGGTAGCTCAGGAAAAGGTTGGCAACTATTAGCACTCATTGTATCTGCACAGCACCGGTTTAAGGATGCTGAGACTGTAGTTGATTTTGCTTTAGATGAATCTGGAAGGACAGATCAGTTACAACTTTTAAGATTGAAAGCTGTGCTTCAAATTGCTCGGCAGCAACCTAAGCAAGCAATAGAGACCTACAAAATCTTGCTAGCTCTGATTCAAGCACGAAAAGATTTTTGGCTTGAATATAAGAACATCGATCCAGCAAACACGCTGAGACATGAGGATTTAACAGAAAAAAAATTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCCGATCTAGGCGCCTTACTTGATGCAAAAACTTGTGTAGACAAAGCCCAGCTTATAGAACTCTTCTCTCCCAGAAGTTGGCATATTACAGGGAAATTGTTTGAAGCTAAATCATTATACAAGGAGGCCATTGTTTCTTTCACAATTGCGCTGTCGATAGAACCAGATTATGTTCCCAGCATCATTTCAACTGCAGAATTGTTGTTGAAAGCTGGTATGCAATCACTTCCAATCGCAAGAAGCTTTTTGATGAACGCTCTGCGTTTGGAGCCCACAAACCATGATGCGTGGTTCAACCTTGGACTCGTTTCGAAAATGGAAGGTTCATTGCAGCAAGCAGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGCTTTCAGCTCCAGTTGAAAGATTTGTGGGGGTAATTGAGACTTCGAGATGA 2169 0.4361 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWESKFDDTQVDEAESTLKEALSLNYEEARALLGRLEFQRGNFDAALQVFQGIDIKGLTPRMIRAISERTKQRKPRSKADRVLPSIMSMHSVSLLLEAILLKAKSLEALGRYTEAAKECKVILDTVDSALPAGMPQGFGVDCKLQGMFHRALELLPVLWTNAGLLDEAITAYRRALIKPWNLEPQRLAAMQKDLAVTLLYGGVEMSLPSHLHVWGVTTPKTNIEEAVLLLLILMRKIALQEIEWDSDLLDHLAFALSTVGMFESLADHVEQILPGVYSRAERWYFLALCYSAAGQNETALNLLMKVCGSSEAKHIPHFPSFLLGAKLCSQDPNHAHEGIKLSRKVIDLAKHQCEHFQGQGHKFLGVCYGAAARISLLDSERVICQRESLNSLNQAAVIGNWDPEVIFSLGLENAVQRNLAAAYENAVMYSDMIVGSSGKGWQLLALIVSAQHRFKDAETVVDFALDESGRTDQLQLLRLKAVLQIARQQPKQAIETYKILLALIQARKDFWLEYKNIDPANTLRHEDLTEKKLEMEAWQDLATIYADLGALLDAKTCVDKAQLIELFSPRSWHITGKLFEAKSLYKEAIVSFTIALSIEPDYVPSIISTAELLLKAGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVERFVGVIETSR 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00068 722 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Pral3970g00068 722 MobiDBLite consensus disorder prediction 21 37 - -
Pral3970g00068 722 SUPERFAMILY TPR-like 46 339 IPR011990 GO:0005515
Pral3970g00068 722 MobiDBLite consensus disorder prediction 6 40 - -
Pral3970g00068 722 Gene3D Tetratricopeptide repeat domain 34 239 IPR011990 GO:0005515
Pral3970g00068 722 Gene3D Tetratricopeptide repeat domain 257 547 IPR011990 GO:0005515
Pral3970g00068 722 Pfam Tetratricopeptide repeat 46 89 - -
Pral3970g00068 722 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Pral3970g00068 722 SMART tpr_5 511 544 IPR019734 GO:0005515
Pral3970g00068 722 SMART tpr_5 317 350 IPR019734 GO:0005515
Pral3970g00068 722 SMART tpr_5 572 605 IPR019734 GO:0005515
Pral3970g00068 722 SMART tpr_5 606 639 IPR019734 GO:0005515
Pral3970g00068 722 SMART tpr_5 676 709 IPR019734 GO:0005515
Pral3970g00068 722 Gene3D Tetratricopeptide repeat domain 548 710 IPR011990 GO:0005515
Pral3970g00068 722 SUPERFAMILY TPR-like 478 706 IPR011990 GO:0005515
Pral3970g00068 722 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00068 Pral-Chr3970 498104 502192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00068 1 715 Calmodulin-binding Proteins AT1G27460 59.805 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00068 K21843 - gmx:100780807 1124.77