Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00058 ATGGAGCCACTTGGAGTCATCCCTGATGGGGAAATGAGTTGCTTTCGAGGAATTTTTGCCTCAGAAGAGCATGATTACTTGCCACAATTTCTTGGCCAAAGCTCACTTCTGCCCGGTGAACGTGATCGAATGCTTATCGGAATAGAATCTGCATTTCGCTCTGCTCCTGAAGCTGGGGAAAATGAGTACATTTTTAATTCTTTAGATGCTCCCAACCCAGATTTGCGGCTTATTCCTCAAGCAAGTAGTTTCAATACTAACTGTAGTGGCGATGCTTTCTTCGGTGCCAACCCGGGCCATATGAACTACTATCTCAGTGATCCTAATCAGGCACTAGCAAATGATGCCTGCATGTTCATGAATGTTTGCATGATGCATGAGAAAGACACTGGCACTTTCATCCCATCACCGGAAAATGTTTTGGTGGAAGAAACTGTTAGCTTTAATGAAGACAGAATAGGGGACAAATTGGAGAGTTCTAATCAAAGTCGAGCTGAGGTCACAGCTTTTGTTGCCGAACAGTTGCGCCTGAAAGGGAAGTTTGAAGTGCCAGAATTGGAGGCTTCAGCATCTGAGAACCAGAAGAAGAAACCTCGTTTCTCAAGAGATGTTCAAAAGAGTAAGAAAAATGCACAGCTAAAGAAGAACCACAAGGTTTCAGGGAATGGCTATGGGGCAGAAGAGACTGATACAGGATTACATGGACTGAGCTGTAGTAGTTACAGCTTAGAGGACGATAATGCTTCTCAGGAAAATAGCGGAGGAGCTTCCTCAGAGTCTAAATCACTAGTGACTCAAAACACAAATGGGAAAACCAGGGCCAGTAGGGGATCAGCAACAGATCCCCAGAGCCTTTATGCCAGGAAAAGAAGAGAGAGAATAAATGAACGACTGAGAATCCTACAGAATCTTGTTCCAAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCACTACGTGAAATTTTTGCAGCTCCAAATTAAGCTTTTAAGTTCTGATGACCTGTGGATGTACGCTCCAATTGCTTATAATGGAGTTGACATTGGATTGAATCTCAGCCGCAAGGTTTCTCCACCAACATGA 1095 0.4374 MEPLGVIPDGEMSCFRGIFASEEHDYLPQFLGQSSLLPGERDRMLIGIESAFRSAPEAGENEYIFNSLDAPNPDLRLIPQASSFNTNCSGDAFFGANPGHMNYYLSDPNQALANDACMFMNVCMMHEKDTGTFIPSPENVLVEETVSFNEDRIGDKLESSNQSRAEVTAFVAEQLRLKGKFEVPELEASASENQKKKPRFSRDVQKSKKNAQLKKNHKVSGNGYGAEETDTGLHGLSCSSYSLEDDNASQENSGGASSESKSLVTQNTNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGVDIGLNLSRKVSPPT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00058 364 MobiDBLite consensus disorder prediction 242 290 - -
Pral3970g00058 364 CDD bHLH_AtIND_like 279 341 - -
Pral3970g00058 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Pral3970g00058 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 343 IPR036638 GO:0046983
Pral3970g00058 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 136 350 - -
Pral3970g00058 364 SMART finulus 284 333 IPR011598 GO:0046983
Pral3970g00058 364 MobiDBLite consensus disorder prediction 242 282 - -
Pral3970g00058 364 FunFam Basic helix-loop-helix transcription factor 279 336 - -
Pral3970g00058 364 Gene3D - 280 336 IPR036638 GO:0046983
Pral3970g00058 364 MobiDBLite consensus disorder prediction 186 229 - -
Pral3970g00058 364 MobiDBLite consensus disorder prediction 186 210 - -
Pral3970g00058 364 Pfam Helix-loop-helix DNA-binding domain 288 328 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00058 Pral-Chr3970 415792 417317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00058 244 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 77.966 2.66e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3970g00058 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00058 - - pcin:129302137 553.518