Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00057 ATGGCCCTGGAAGCTCTCAAGTCCCCTACTGCCGCTCCTCCCTCCTTCCCCTTCGAATTGGACTCCAATCTTCACTCCTTGGAGCCATGGACCAAGCGCAAGCGTTCCAAGCGTTCCCGTCTCGACCATCCTTCCTCATGCACCGCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTGGCTCGCGGTCGCTCCGCCGTCTCCCCCACCCATCCCACCGACTCCGACCGCCATAGATCCCCCCAGGACAATCTTCCCCCGGCTGTATCTGAGTCGGCTCCACCGTCCGCAACAGATCCAACCACCGCCCCTAAGCTCAGTTACAAATGCTCTGTTTGCGACAGGACTTTCTCCTCTTACCAGGCTCTTGGTGGACATAAGGCCAGTCACAGAAAACTCACTGCAGGCGGCGCTCCCGGGGAAGATCAATCCGCCTCCTCCGCCGTCACAAGTACTTCTGCAAACACCACTGCAACTGCATCCAACGCGGGGGGTAAGTCCCACGAGTGTTCTATCTGCCACAAGTCCTTCCCCACCGGACAGGCCCTGGGAGGTCACAAGCGCTGTCACTATGACGGCGGAGCAGCCGCCGCTGGCGGTGGTAGCAGCGCTGTCACTGCCTCGGAAGGAGTTGGATCCACACATACCGTTAGCCACAGCCACCGTGACTTCGACCTGAACCTTCCCGCTCTGCCCGACTTCTCGGCCAAGTTCTTAACTCCCGGGGACGACGAGGTGGAGAGCCCTTTGCCGGTCAAGAAGCCGCGTCTTTTGATGGCACCCAAAATCGAGGAAGATCACTGA 807 0.596 MALEALKSPTAAPPSFPFELDSNLHSLEPWTKRKRSKRSRLDHPSSCTAEEEYLALCLIMLARGRSAVSPTHPTDSDRHRSPQDNLPPAVSESAPPSATDPTTAPKLSYKCSVCDRTFSSYQALGGHKASHRKLTAGGAPGEDQSASSAVTSTSANTTATASNAGGKSHECSICHKSFPTGQALGGHKRCHYDGGAAAAGGGSSAVTASEGVGSTHTVSHSHRDFDLNLPALPDFSAKFLTPGDDEVESPLPVKKPRLLMAPKIEEDH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00057 268 MobiDBLite consensus disorder prediction 66 105 - -
Pral3970g00057 268 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Pral3970g00057 268 Gene3D Classic Zinc Finger 107 191 - -
Pral3970g00057 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 131 IPR013087 -
Pral3970g00057 268 SMART c2h2final6 109 131 IPR013087 -
Pral3970g00057 268 SMART c2h2final6 169 191 IPR013087 -
Pral3970g00057 268 MobiDBLite consensus disorder prediction 141 167 - -
Pral3970g00057 268 MobiDBLite consensus disorder prediction 1 46 - -
Pral3970g00057 268 MobiDBLite consensus disorder prediction 86 105 - -
Pral3970g00057 268 SUPERFAMILY beta-beta-alpha zinc fingers 109 191 IPR036236 -
Pral3970g00057 268 MobiDBLite consensus disorder prediction 241 268 - -
Pral3970g00057 268 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Pral3970g00057 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
Pral3970g00057 268 MobiDBLite consensus disorder prediction 125 167 - -
Pral3970g00057 268 Pfam C2H2-type zinc finger 169 193 - -
Pral3970g00057 268 Pfam C2H2-type zinc finger 109 133 - -
Pral3970g00057 268 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 233 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00057 Pral-Chr3970 398216 399318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00057 1 265 C2H2 Transcription Factor Family AT1G27730 51.481 7.63e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3970g00057 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00057 - - pcin:129298535 434.106