Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00043 ATGACGGTGCCGCCTTTCTCGTGGAAGAAGCTATGGCTATTCACGGGACCGGGCTTCTTGATGAGCATAGCTTTTTTGGATCCGGGAAATCTCGAAGGAGATCTCCAGTCTGGAGCCATCGCCGGCTACTCCCTGCTCTGGCTATTGATGTGGGCCACAATTATGGGATTGATGATTCAGCTTCTTTCCGCAAGGATCGGGGTGGTCACTGGTCGGAACCTGGCGGAGCTGTGCAGAGACGAATATCCAAATTGGGCTAGGTTGGTGCTGTGGTTCATGGCCGAGCTGGCCTTGATTGGTGCTGACATTCAAGAGGTCATCGGGAGTGCCATCGCAATACAAATTCTTAGCCATGGGGTGTTGCCGCTTTGGGCTGGAGTCGTGATTACTGCTTCCGATTGTTTCTTCTTTTTATTTCTTGAGAATTATGGAGTAAGGAAGCTGGAAGCTGTTTTTGCAGTTCTCATTGGGACAATGGCCCTTTCTTTTGCCTGGATGTTTGGTGACGCCAAACCTAGTGGAAAAGAACTCATGATGGGAATTTTAGTTCCAAGACTTAGCTCAAAAACAATTCGTCAGGCTGTGGGGGTTGTGGGTTGCGTCATAATGCCTCACAACGTGTTCTTACATTCTGCTTTGGTGCAGTCAAGGGAAATTGATCCCCGTAAGAAAGGCCAGGTGCAGGAGGCTCTTAACTACTATTCCATTGAGTCAACAGTTGCTCTTTCAGTCTCCTTCATCATCAACCTATTTGTCACCACAGTTTTTGCTAAGGGGTTTTACAGTTCAAAGCAGGCCAGTAGCATAGGATTGGTTAATGCAGGGCAGTATCTTCAGGAAAAGTATGGAGGAGGGCTCTTCCCAATTCTTTATATATGGGGTATTGGGTTATTGGCAGCTGGGCAGAGTAGCACCATTACTGGCACATATGCTGGGCAGTTCATTATGGGAGGTTTTCTCAACCTTCGTTTAAAGAAATGGTTAAGGGCATTAATCACTCGAAGTTTTGCAATTCTGCCAACAATGGTTGTAGCTATTGTTTTTAATACATCTGAAGCATCATTGGACATTCTGAATGAGTGGCTGAACGTGCTTCAGTCGATGCAAATTCCTTTTGCACTTATCCCTCTGCTCACCTTGGTCTCCAAAGAACAGGTCATGGGGACCTTTAGGATTGGACTTGTTCTTGAGAGGGTAGCGTGGACTATTGCTGCGCTGATAATGGTGATCAATGGGTATCTATTGTTAGATTTCTTCCTGTCGGAAGTGAAAGGTCTGCTGTTTGGTTTTGTAGTTTGCTCCTGCACAGCTGCTTATGTGGCATTCATTGTATATTTGATTTCCCTAAGTGGTGCTGTTCCTTTTTCTTGGGTTAATCTACTCGCCAAGAGATTTTCTCTCTCTGAGGTTTGA 1413 0.4593 MTVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATIMGLMIQLLSARIGVVTGRNLAELCRDEYPNWARLVLWFMAELALIGADIQEVIGSAIAIQILSHGVLPLWAGVVITASDCFFFLFLENYGVRKLEAVFAVLIGTMALSFAWMFGDAKPSGKELMMGILVPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSREIDPRKKGQVQEALNYYSIESTVALSVSFIINLFVTTVFAKGFYSSKQASSIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAILPTMVVAIVFNTSEASLDILNEWLNVLQSMQIPFALIPLLTLVSKEQVMGTFRIGLVLERVAWTIAALIMVINGYLLLDFFLSEVKGLLFGFVVCSCTAAYVAFIVYLISLSGAVPFSWVNLLAKRFSLSEV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 145 166 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 329 346 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 194 217 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 120 139 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 363 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 90 116 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 PRINTS Natural resistance-associated macrophage protein signature 301 320 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 Pfam Natural resistance-associated macrophage protein 32 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 9 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 NCBIfam Nramp family divalent metal transporter 16 385 - -
Pral3970g00043 470 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 5 448 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pral3970g00043 470 Hamap Divalent metal cation transporter MntH [mntH]. 1 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00043 Pral-Chr3970 347652 362822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00043 2 451 Inorganic Solute Cotransporters AT1G47240 84.667 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00043 K21398 - qsa:O6P43_016014 834.713