Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00020 ATGGAAGAAAGAGACTGTTGTTCGAGGGATTCGACGATCACGACGAGCAGAAGCGGCCCAGAGAAGCGGAAGCAGCAGAGACAACACCAAAAAGCAGCGAAGGACAAGCCATACAGAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATCAGAGAACCCAACAAGAGGTCCAGGATTTGGCTCGGTTCTTACACCACGCCCATCGCCGCCGCACGCGCATACGACACCGCCGTTTATTACCTCCGAGGCCCTTCTGCTTCCCTCAACTTCCCCGAGCTGTTGTTCCAAGAAGACGACGCCCTCAGCCGCGGCGACATGTCCGCCGATTCCATACGCAAGAAAGCCACCGAAGTCGGCGCCAGAGTTGACGCCCTCCAAACAGCCCTTCACGCCTCCTCTCCCTCCACCAGTTCTACCCAAACCACCTCAGACAAACCCGACTTGAATGAGTACCCGCAACCCGAAGACTCCGTCGAAGACTATAATTAG 498 0.5643 MEERDCCSRDSTITTSRSGPEKRKQQRQHQKAAKDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVYYLRGPSASLNFPELLFQEDDALSRGDMSADSIRKKATEVGARVDALQTALHASSPSTSSTQTTSDKPDLNEYPQPEDSVEDYN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00020 165 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 MobiDBLite consensus disorder prediction 1 37 - -
Pral3970g00020 165 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 PRINTS Ethylene responsive element binding protein signature 76 96 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 160 - -
Pral3970g00020 165 MobiDBLite consensus disorder prediction 128 165 - -
Pral3970g00020 165 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Pral3970g00020 165 MobiDBLite consensus disorder prediction 131 151 - -
Pral3970g00020 165 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Pral3970g00020 165 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Pral3970g00020 165 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00020 Pral-Chr3970 168623 170264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00020 22 147 AP2-EREBP Transcription Factor Family AT1G46768 66.165 1.56e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral3970g00020 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00020 K09286 - qsa:O6P43_016042 219.164