Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00017 ATGGCGCAAATGCAGGTGCAGCATCCGAACCCTTTGTCGGCTCCCAATGGTGTGGCGCCGACTCCAACCGTGAACCAATTCCCGGGTGCATCCTTGTACGTTGGGGATCTCGACCTGGACGTGACCGATTCTCAGCTCTACGATCTCTTCAACCGGCTGGGACAAGTTATTTCTGTTCGAGTATGCAGGGACGTCACCAGCCGTCGATCCCTTGGTTACGGTTATGTCAATTACAGTAATACTCAGGATGCGGCCAGAGCAGTGGATGAGCTGAATTTCACGCCGCTGAACAACAAGCCCATCAGGATTATGTATTCCAATCGGGATCCTAGTAGTCGGAAGAGTGGAGCAGCGAATATATTTATCAAGAATTTGGATAAGACAATTGACCACAAGGCTTTACACGAGACTTTTTCTGCTTTTGGAAATATTCTTTCTTGCAAAATAGCAACGGATGCATCTGGCCAGTCCAAAGGCTATGGATTTGTTCAATTCGACAAAGAAGAATCTGCGCAAAATGCAATTGACAAGTTAAATGGCATGCTGATAAATGATAAGCAGGTCTATGTAGGGCATTTTCTGCGAAAAGAAGATAGAGAGAGTGTTTCTACCAAGACAAAATTCAATAATGTCTATGTGAAAAACCTATCAGAGTCAATGACTGATGAAGATTTGAAGAAAACTTTTGGAGAATATGGGACCATTACTAGTGCCGTGATAATGAGAGATGCAGATGGTAAATCAAAATGCTTTGGTTTTGTCAATTTTGAAAATGCAGATGATGCTGCTAATGCTGTTGAGGCACTTAACGGAAAGAAGTTTGATAACAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGAGAGCTTGAGTTGAAAGGACGATTTGAGGAGAGTATGAAGGAAGCACTTGACAAACATCAAGGGATGAACTTGTATGTCAAGAATTTGGATGAGAGCATCAGTGATGAGAAACTGAAGGAAATGTTCTCTGGATTTGGTACAATAGTTTCTTGCAAGGTTATGCGGGAACCAAATGGAATAAGTAAAGGATCGGGGTTTGTTGCATTCTCATCTCCTGAAGAAGCTTCACGAGCTCTTTCGGAGATGAATAGTAAAATGGTTGCTGGCAAACCGCTGTATGTTGCACATGCTCAAAGAAAAGAAGACAGAAGAGCTAGGTTACAGGCGCAATTCATACAAATGAGGCCTGTTCCGTTGGTGCCTTCTGTTGGTCCACGCATGCCAATGTATCCTCCTGGGGCTCCAGGTCTGGGACAACAATTTTTGTATGGGCAAGCACCACCTGCCATCATTCCCCCACAAGCTGGGTTTGGTTATCAGCAGCAACTCGTTCCTGGGATGAGGCCTGGGGGGGCTCCAATGCCAAACTTTTTTGTTCCAATGGTCCAGCAGGGTCAACAAGGTCCACGTCCTGGGGGGCGCCGTGGAGCAGGTCCTGTGCAACAATCCCAGCAGCCGATGCCACTAATGCAGCAGCAGATGCTTCCAAGAGGACGTGCCTACCGTTACCCTCCTGGTCGCAACATGCAAGATGTTCCAATGCCTGGAGGAGCTGGTGGAATGCTTTCTGCCCCTTATGACATGAGTGGTTTACCAATCCGGGATGCTGCTGGGCAACCATTGCCCAGACAGGCATTGGCTACAGCCCTCGCAAATGCTCCACCTGAACAGCAGAGGACTATGCTGGGCGAGGCTTTATACCCTCTTGTAGAACAGCTGGAGCGTGATGCAGCAGCTAAGGTAACAGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCATCTTATTGAATCACCTGAAGCTTTGAAGGCTAAAGTTGCTGAGGCCATGGAGGTTTTGAGAAATGTTGCTCAGCAAGTTAGCAGCCCAACCAATCAACTGGCCTCGCTCTCTCTTAATGACAACCTAGTTTCGTAA 1950 0.4667 MAQMQVQHPNPLSAPNGVAPTPTVNQFPGASLYVGDLDLDVTDSQLYDLFNRLGQVISVRVCRDVTSRRSLGYGYVNYSNTQDAARAVDELNFTPLNNKPIRIMYSNRDPSSRKSGAANIFIKNLDKTIDHKALHETFSAFGNILSCKIATDASGQSKGYGFVQFDKEESAQNAIDKLNGMLINDKQVYVGHFLRKEDRESVSTKTKFNNVYVKNLSESMTDEDLKKTFGEYGTITSAVIMRDADGKSKCFGFVNFENADDAANAVEALNGKKFDNKEWYVGKAQKKSERELELKGRFEESMKEALDKHQGMNLYVKNLDESISDEKLKEMFSGFGTIVSCKVMREPNGISKGSGFVAFSSPEEASRALSEMNSKMVAGKPLYVAHAQRKEDRRARLQAQFIQMRPVPLVPSVGPRMPMYPPGAPGLGQQFLYGQAPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGPRPGGRRGAGPVQQSQQPMPLMQQQMLPRGRAYRYPPGRNMQDVPMPGGAGGMLSAPYDMSGLPIRDAAGQPLPRQALATALANAPPEQQRTMLGEALYPLVEQLERDAAAKVTGMLLEMDQPEVLHLIESPEALKAKVAEAMEVLRNVAQQVSSPTNQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00017 649 Gene3D - 21 117 IPR012677 -
Pral3970g00017 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Pral3970g00017 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Pral3970g00017 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Pral3970g00017 649 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Pral3970g00017 649 FunFam Polyadenylate-binding protein 119 192 - -
Pral3970g00017 649 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Pral3970g00017 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Pral3970g00017 649 SUPERFAMILY PABC (PABP) domain 494 634 IPR036053 GO:0003723
Pral3970g00017 649 FunFam Polyadenylate-binding protein 295 400 - -
Pral3970g00017 649 FunFam Polyadenylate-binding protein 199 294 - -
Pral3970g00017 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Pral3970g00017 649 FunFam Polyadenylate-binding protein 11 113 - -
Pral3970g00017 649 MobiDBLite consensus disorder prediction 474 495 - -
Pral3970g00017 649 PANTHER RNA BINDING PROTEIN 30 92 - -
Pral3970g00017 649 Gene3D - 194 295 IPR012677 -
Pral3970g00017 649 SMART rrm1_1 210 282 IPR000504 GO:0003723
Pral3970g00017 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Pral3970g00017 649 SMART rrm1_1 313 385 IPR000504 GO:0003723
Pral3970g00017 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Pral3970g00017 649 Gene3D - 296 400 IPR012677 -
Pral3970g00017 649 CDD RRM4_I_PABPs 311 389 - -
Pral3970g00017 649 FunFam Polyadenylate-binding protein 548 630 - -
Pral3970g00017 649 SUPERFAMILY RNA-binding domain, RBD 29 199 IPR035979 GO:0003676
Pral3970g00017 649 Gene3D - 118 192 IPR012677 -
Pral3970g00017 649 SMART rrm2_1 313 385 IPR003954 GO:0003676
Pral3970g00017 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Pral3970g00017 649 SMART rrm2_1 31 104 IPR003954 GO:0003676
Pral3970g00017 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Pral3970g00017 649 SMART poly_2 564 627 IPR002004 GO:0003723
Pral3970g00017 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Pral3970g00017 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Pral3970g00017 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Pral3970g00017 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Pral3970g00017 649 CDD RRM2_I_PABPs 116 192 IPR045305 -
Pral3970g00017 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Pral3970g00017 649 Gene3D - 549 631 - -
Pral3970g00017 649 MobiDBLite consensus disorder prediction 1 21 - -
Pral3970g00017 649 CDD RRM3_I_PABPs 208 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00017 Pral-Chr3970 145151 148973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00017 1 644 Eukaryotic Initiation Factors Gene Family AT4G34110 67.538 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00017 K13126 - gmx:100784442 1028.08