Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00013 ATGCAAGGCCAGAGGGGTGCAATTGGTTCCTTGCCTGAAACCTTAGAATTCAATTGTGGATCCACATCAAGTAATCCTACTGTGGATCAGCAAATTTGCTGGAATAATATGCGGAATCCTGCTGATAATGATACTAATATACCTGAGTATTTACTTCCTTTGAACGATATGAACCCACCATATAATTCTATAAGCCATGAATGGCAGAATTCAAGTGGATGGAGCTTAGGTGAGCCAGTTCTAGTAATACCCAGAGTGAAAATCAACAACAATCTGCAGAAAAGAGAACTTGGATGGACATCTCCAATTAGTGCTAGTGCTGCAGCTGGTCCAAGAGCAGAAGGAAGGCACTTTGAGCCAACTTCCTCTCTTTCGGCTGACAATGTTAATTCCAGTCCCACATATATGCACAACTCCGGTTCTCACATGTCACCGAATCTCAACTTAAATGCTGGCTTGGCAGATGTTGGTGGTGATAACAGCCAGCTTTTGGAGCATCCGAACTTGCACAAATCTAGTGGATCAGTAAACGAGCATGTTCCACCTGGCATTGTTTCTGGTCCTTTTCCTCCTCCTCCTGGAAATAACAGCTTTGTGCTAGAAGGCACTGATGCTAGGTCGGGTTGTTCTCTAGATGTGTGCCGTGCATCTTGTAAAAGAAAGGCCGTTGAAGAAAATGTCGGACCATCTTTGGATGGTGGAAGTTCTAGTTCTAGTCAGCATGCAGAAAGTAGTGCTTGGAACACTCTTCCAACTCAGGATAATGCTGGGAGCAGTTTAAGTAGATCTGCTTCATCTGAGCAAGTAAATGCTAGACTTGGGCTGGGAATGGGGGATGAAACCCCTGAAAACCTTCCTGATTCAAATGATGTGGGGAGCACTGGAAGCTTCCACAGGAATCTCCGTTTGAGGATAAGTCCTTCAGGCCTGCAAGATTCAATTCCTCCCCCTGCATTCTCTACTGGGAGTGTGATTAGGCATTCTAGTATGTCAACCTCGTCAATGTCACATAGGTTCCCGCCTGTTGATAACTCCCTGGACTTGAGGGCAGCACCAATGGTAGATAATGTAATTCCTCAAAGCCAGCCCCTTGTGATCCATGTTCCTTCTTTGCCAAGGAATATGCAATCATTACGATGGAATGGTAGTTCTAGTTCAAGCAACAGCCAATCATCAAGCCCAATCCTTTGTGCAGAGAGGGATAACCAACCACAGGAAGAATCAAGCTCAAGAAGTATTTCTAGAAACATTTTTGATCGCCCAGTGTTCGTACCTGCAACTGATTTAAGAAATATTGTCCGAAATCCAACAACTAGAGCTTCAGGTAGCACAAATTTAAGCATGTCTGGAAATGTTGCTTCTTCTTCACGGGCTGGATCAAATTCAGCTATCAATCAGTCATCTGTCGCATGGGTTTCTCGTCCTAATCCTCCACAATATCCACGTAGATTGTCTGAATATGTTCGTCGATCATTGTTTTCTCCTCCTCCTGAGACCGCTGGAAGTCAAAATCCAAGCAATAATCATTCCTTGCGCTCTGGTCCTAGTGCTTCATCTGAAGCAAGGGTGCCATCTTCTGGGGCTGGTGGCCAAGGACATCATTCATCACACCCAAGATCTTTGTGGATGGAGAGGCAAGGTGACGCTGAATTTGGAATACCTTATTCATTGCGAAGTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGTAGACTAGTATCTGAGCTCCGTAATGTTTTGGGCCTCATGCGAAGGGGTGGAGGCCTGCGATTTGAGGATGTTATGATTCTTGATCAGTCAGTCTTTTCTGGAATGGCTGATATTCATGATCGACACAGAGATATGCGTCTTGATGTTGATAACATGTCTTACGAGGAGTTGCTGGCTCTAGAGGAGCGAATTGGAAATGTGAGTACTGGGTTGAGTGAAGAAACTGTAATGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAAAAGGATCTAAACTTGAGGCAGAACCGTGCTGTGTCTGTCAGGAGGAGTATAATGATGGAGATGATATAGGAACCCTTGATTGCGGGCATGATTACCACACAGGCTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCCTCGTGA 2145 0.4462 MQGQRGAIGSLPETLEFNCGSTSSNPTVDQQICWNNMRNPADNDTNIPEYLLPLNDMNPPYXNSISHEWQNSSGWSLGEPVLVIPRVKINNNLQKRELGWTSPISASAAAGPRAEGRHFEPTSSLSADNVNSSPTYMHNSGSHMSPNLNLNAGLADVGGDNSQLLEHPNLHKSSGSVNEHVPPGIVSGPFPPPPGNNSFVLEGTDARSGCSLDVCRASCKRKAVEENVGPSLDGGSSSSSQHAESSAWNTLPTQDNAGSSLSRSASSEQVNARLGLGMGDETPENLPDSNDVGSTGSFHRNLRLRISPSGLQDSIPPPAFSTGSVIRHSSMSTSSMSHRFPPVDNSLDLRAAPMVDNVIPQSQPLVIHVPSLPRNMQSLRWNGSSSSSNSQSSSPILCAERDNQPQEESSSRSISRNIFDRPVFVPATDLRNIVRNPTTRASGSTNLSMSGNVASSSRAGSNSAINQSSAXAWVSRPNPPQYPRRLSEYVRRSLFSPPPETAGSQNPSNNHSLRSGPSASSEARVPSSGAGGQGHHSSHPRSLWMERQGDAEFGIPYSLRSLAAAGEGSSSRLVSELRNVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVMKLLKQKKYSVEKGSKLEAEPCCVCQEEYNDGDDIGTLDCGHDYHTGCIKQWLMHKNLCPICKTTGLAS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00013 716 MobiDBLite consensus disorder prediction 227 325 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 498 535 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 376 415 - -
Pral3970g00013 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 122 149 - -
Pral3970g00013 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 216 714 IPR045191 GO:0061630
Pral3970g00013 716 MobiDBLite consensus disorder prediction 435 475 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 287 302 - -
Pral3970g00013 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 713 IPR013083 -
Pral3970g00013 716 SMART ring_2 669 709 IPR001841 -
Pral3970g00013 716 FunFam E3 ubiquitin-protein ligase MBR2 637 714 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 231 271 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 435 546 - -
Pral3970g00013 716 MobiDBLite consensus disorder prediction 109 203 - -
Pral3970g00013 716 Pfam Ring finger domain 669 710 IPR001841 -
Pral3970g00013 716 SUPERFAMILY RING/U-box 657 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00013 Pral-Chr3970 124772 128852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00013 1 716 C3H Transcription Factor Family AT2G15530 33.950 2.91e-82 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00013 - - gmx:100783014 863.218