Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00012 ATGGCTGATATGTACGGTACTCCTCCTTCTCTGCTCACCGCCTCCGCCACGCCTTCTGATTCCGACGATTTCTCCACCTTCTTCACCCACCTTCTCCATAACTCGCCCTCCCCTTCCATACTTTCCAAACCTAAAACCTCAGCGCCGCCGTGGCTCCCTCCGCCTGTGGGGACCGCTGGGTTTGGCCAATCCGGGTCGGACTCCCCTCACAAAAATGGCAAGTCTGTTGGGTCTTCCGGTGTAGTGTCTGATTCTTTTGACTTTTCTGATCCCTATGCGTACGTTCCGGCTCATGTGATAGAGGCTACTGGAAATGAGTTCTTTCCGACTCGTATCGACGATTCTGATGAAAATACTTGCTTCAAAGAACACAGGATTTCGCCGGAGATTGATCCCGGCGATTTCATTTGTGCCGTCGAGAAGAATGGTGAGGCGTCGCAGACACAGCGAGTCCCAGCACGTACTTCCTCAAAGAGGAGCAGAGCTGCAGAGGTTCATAATATGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTACAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCAATGCTGGACGAGGCGATTGAATATTTGAAGCAGCTTCAGTTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGAGTGCAATCCATGACACTGCCTCAGACAGGGTTGAATTTTGACGAGTCCAATGGATATCAGACTTCTTCTCGCGGAATTGCCTCGTCCGGGAATGCTGAATGCTTGGTGCACCCAGACTTCAGTCTTCCAAAGCATTGCAGCATCTCAGATCAACCCGTGATCAAGATGGCCAACCCAGATAATTCATCTGGCTTCAGATTTCACGTTGCACAATTCGACCCTTCTACGTCATGCAAGGATGCGCTCTCTGATGGCGCGCCACAGCTCCATTTGGATGCCACGAAGATTGAAAAGAGTGCGTCTTCTGATGTCTCGCACAGTCTCCAAGGTCTTGGCTTCACTGTCACTGTGCTGTTTCGCCTTATTCATCGCTGCACAGATACAGACTGCGTTCCACTTGCTGGTGGTTACTCTTCTCATCCTCCTCCTCCTTCTTTCATAACTTGGGGAGGGGAGAAGAAGAGAACAATGACGAGCTACGCGTTTCTGAACGATCAGCTCTCAAAGCACACTTCAATTTTTGGGTTACGGCTCTGGGTGGTGCTCGGTATATGCGTCGGAGCAGCCATTGTCATTTTACTGTTTATCATATCACTCTGGTTCGCTGCAAAACGCAATAATGCTTCCAAGCTCAAGTCTTGTCAGAAACCCAACATCAACATACCAAGTGTGTCCAAGGAGATTCAAGAAATCCGGATTGACCATTCTCGTGAACCAACCAAGCCAAACCTCGTGCCTAACCCCGACCCACTGCCGGAATCACAGTCCGAGGCTCTAGAAAGAGCACAAGCCATTCTTCTTCAGCAGGAGGACGAAAGCCCAGGAACAGGCCCCCACAAAATTCACATCGAAATTGGAAAAGGCCACCGGATTTCGTTCCCTGAGCGGGGTGGAGGTTCATCTCATGGCAGCGGGGAGGTTCGGTCCGGTGAGCAACCCTCCATTGCTGTGCCGGAGGTTTCTCATTTGGGTTGGGGGCACTGGTACACTCTTCGAGAGCTTGAGGTCTCCACCAATTTTTTCGCCGATGAGAACGTCATAGGCGAAGGTGGCTACGGAATTGTTTACCGAGGGGTGCTGCAAGATAATACCAATGTTGCTGTTAAAAATTTGCTCAACAATAAGGGTCAAGCCGAGAGAGAATTCAAGGTGGAAGTTCAAGCAATTGGACGCGTTCGGCATAAAAATTTGGTGAGGTTGCTTGGATACTGTGTTGAAGGAGCTCATAGGATGCTTGTTTATGAGTATGTGGACAATGGAAATCTGGAACAGTGGCTACACGGAGATACCGGCCCTTCTAGCCCTCTGACGTGGGATATTCGAATGAATATAATCCTTGGAACTGCAAAAGGGTTAACATACCTTCACGAGGGGCTTGAGCCGAAGGTTGTTCATCGTGATATCAAGTCGAGCAATATATTGCTTGATAAGCGATGGAATCCGAAAGTTTCTGATTTTGGGCTTGCAAAACTCTTGGGATCCGAAAGGAGTTATGTGACGACTCGCGTGATGGGAACATTTGGATATGTGGCGCCAGAATATGCAAGCACTGGCATGTTAAACGAAAGAAGCGATGTGTATAGCTTTGGGGTTCTTCTTATGGAGATAATTTCTGGTAGAAACCCAGTTGACTATAGCCGTCCTCCAGGAGAGGTGAACCTGGTTGAGTGGCTGAAGACAATGGTCACAAACCGAAATGCGGAAGGTGTGCTGGATCCTAGGCTGCCTGAGAAACCTCCTTCTAGAGCACTGAAGCGTGCCTTGTTAGTAGCTTTACGGTGTGTAGATCCAAATGTCCAGAAAAGGCCGAAGATGGGACATGTTATCCATATGCTCGAGGCTGATGAGTTCCCATTTCGAGATGACCGTAGAGTTGGAAGGGAATATGGAAGGTCCCATCAGGATAACACAAGAGATAGGTTGATGGAAAAGCGAGTGAGCGAATCCGGTGACAATGGTGTGTATGAAAGTAGTTCCCACAATAAATAG 2688 0.4836 MADMYGTPPSLLTASATPSDSDDFSTFFTHLLHNSPSPSILSKPKTSAPPWLPPPVGTAGFGQSGSDSPHKNGKSVGSSGVVSDSFDFSDPYAYVPAHVIEATGNEFFPTRIDDSDENTCFKEHRISPEIDPGDFICAVEKNGEASQTQRVPARTSSKRSRAAEVHNMSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQFQVQMLMMRNGLSLHPMCLPGGVQSMTLPQTGLNFDESNGYQTSSRGIASSGNAECLVHPDFSLPKHCSISDQPVIKMANPDNSSGFRFHVAQFDPSTSCKDALSDGAPQLHLDATKIEKSASSDVSHSLQGLGFTVTVLFRLIHRCTDTDCVPLAGGYSSHPPPPSFITWGGEKKRTMTSYAFLNDQLSKHTSIFGLRLWVVLGICVGAAIVILLFIISLWFAAKRNNASKLKSCQKPNINIPSVSKEIQEIRIDHSREPTKPNLVPNPDPLPESQSEALERAQAILLQQEDESPGTGPHKIHIEIGKGHRISFPERGGGSSHGSGEVRSGEQPSIAVPEVSHLGWGHWYTLRELEVSTNFFADENVIGEGGYGIVYRGVLQDNTNVAVKNLLNNKGQAEREFKVEVQAIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLEQWLHGDTGPSSPLTWDIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKRWNPKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLLMEIISGRNPVDYSRPPGEVNLVEWLKTMVTNRNAEGVLDPRLPEKPPSRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREYGRSHQDNTRDRLMEKRVSESGDNGVYESSSHNK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00012 895 SMART serkin_6 574 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3970g00012 895 Gene3D Transferase(Phosphotransferase) domain 1 650 857 - -
Pral3970g00012 895 Coils Coil 167 187 - -
Pral3970g00012 895 PANTHER OS01G0323000 PROTEIN 390 878 - -
Pral3970g00012 895 SUPERFAMILY Protein kinase-like (PK-like) 558 846 IPR011009 -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 157 175 - -
Pral3970g00012 895 FunFam Probable serine/threonine-protein kinase At1g01540 554 649 - -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 859 883 - -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 146 175 - -
Pral3970g00012 895 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983
Pral3970g00012 895 Gene3D - 156 220 IPR036638 GO:0046983
Pral3970g00012 895 Gene3D Phosphorylase Kinase; domain 1 549 649 - -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 468 488 - -
Pral3970g00012 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Pral3970g00012 895 CDD bHLH_AtPIF_like 161 223 IPR047265 -
Pral3970g00012 895 ProSiteProfiles Protein kinase domain profile. 574 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3970g00012 895 MobiDBLite consensus disorder prediction 523 546 - -
Pral3970g00012 895 CDD STKc_IRAK 580 846 - -
Pral3970g00012 895 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Pral3970g00012 895 SMART finulus 167 216 IPR011598 GO:0046983
Pral3970g00012 895 Pfam Protein tyrosine and serine/threonine kinase 578 845 IPR001245 GO:0004672|GO:0006468
Pral3970g00012 895 FunFam Putative receptor-like serine/threonine-protein kinase 650 860 - -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 859 895 - -
Pral3970g00012 895 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Pral3970g00012 895 MobiDBLite consensus disorder prediction 61 80 - -
Pral3970g00012 895 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Pral3970g00012 895 FunFam Basic helix-loop-helix transcription factor 156 219 - -
Pral3970g00012 895 MobiDBLite consensus disorder prediction 35 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00012 Pral-Chr3970 113352 121705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00012 528 888 Trihelix Transcription Factor Family AT1G70460 44.624 2.64e-89 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Pral3970g00012 PK_Tyr_Ser-Thr 3.7e-46 CL0016
TF bHLH Pral3970g00012 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00012 - - sly:101259435 887.871