Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3970g00008 ATGGCTATGTTGTTGGACAATTGTGAGAGCATTTTACTGTCATTAGACTCGCACAAATCGGTGCCGGCTCCTTTCCTCACCAAGACATACCAGCTGGTGGATGATCCCACCACCGATCACATTGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCCAGGGATCTCCTCCCCAACTACTTCAAGCACAATAATTTCTCCAGCTTCGTTCGCCAGCTTAACACTTACGGTTTTAGGAAGATCGTGCCGGACAGATGGGAGTTCGCGAACGAGTTTTTTAGGAAGGGAGAGAAGCATTTACTCTGCGAGATCCACAGAAGAAAGACGGCTCAACTTCACCAGCATGTCCCCGTTAATCATCATCCTCCTCACCCGCCACTTCCGTTGGGACTCAACGTTCCTACTTTCTTTCCCTTCTCAACCACCAGAATCAGCTTGTCTCCGTCCAACGATTCCGATGACCAACCGCCCCATTGGTGTGACTCGCCACCGCTCACTTCTCCAAGCGGCGGCACCGGCATGGTGACGCTGTCCGAGGACAACGAAAGACTGAGAAGAAGCAACAACATGCTCATGTCTGAGCTGGCCCACTTGAAAAAACTCTATAACGACATCATCTATTTCGTCCAGAATCATGTCAAGCCCGTGGCTCCAAGCAACTCTTTCTCTCCCTCTCTGCTCCTACCCAATACATGCTCACCATCTATGCCTCCTGCAGCTACAAACGTTTCCATGGTGCAAAGGCAAATGAATCAGCTTCTGGGGTATTATTCTACATCTGCTAGCTCAAAGCAAACTACTCCTCAAGTATCTCGTTTTGTGAGATCTCCCGCGACCTTCACGTCAAGAAGTTCCGTCTCCATTGTGGAAGAACCCTGCAGCAATACCAAGCTTTTTGGCGTGTCTCTTCAATCCAAGAAAAGGGCGCATCCTGACTCTCATTCTATTACTCCTGCCAATTCCGAAATGAACAAGGCTCGACTGGTCTTGGAAAAAGATGATGACCTGGCCTTGAATCTCATGCCACCTTCGGCATGTTAG 1062 0.4981 MAMLLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQLHQHVPVNHHPPHPPLPLGLNVPTFFPFSTTRISLSPSNDSDDQPPHWCDSPPLTSPSGGTGMVTLSEDNERLRRSNNMLMSELAHLKKLYNDIIYFVQNHVKPVAPSNSFSPSLLLPNTCSPSMPPAATNVSMVQRQMNQLLGYYSTSASSKQTTPQVSRFVRSPATFTSRSSVSIVEEPCSNTKLFGVSLQSKKRAHPDSHSITPANSEMNKARLVLEKDDDLALNLMPPSAC 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3970g00008 353 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 Gene3D - 17 116 IPR036388 -
Pral3970g00008 353 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 MobiDBLite consensus disorder prediction 154 180 - -
Pral3970g00008 353 Coils Coil 188 208 - -
Pral3970g00008 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 269 IPR027725 -
Pral3970g00008 353 FunFam Heat stress transcription factor B-4 17 115 - -
Pral3970g00008 353 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral3970g00008 353 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3970g00008 Pral-Chr3970 78899 80730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3970g00008 1 351 HSF AT1G46264 52.742 3.08e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral3970g00008 HSF_DNA-bind 3.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3970g00008 K09419 - gmx:100781389 484.567