Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3968g00046 ATGGTGGCGACTAAACTATCCTACGAGGAGAGTCGCCGCAAAAGATTGGAGGAAAACAAGAAGAGAATCGAAGCCCTTAATTTGCACCAGCTTTCTCAAGCCCTACGAAATTCCCCTTCTCCCAAGCCCTCTCCTATGAAGCACACCAAAACTCGTTCAGTGGAGAAGCAGATTGTTGTTGTAAGGAGGTCTGGCCGTGTGGCAAACATGCCCGCTCCTGTTTACAAAGAAGTGGTTATTGATCGCGTGGCAGTACCTAGAAGAGTTTATGGGACCCGAAGAAATTTATCAAACCGCGGACAAGCATCAGAGGAAGCGAGGGAGGAAGCTTTGGCAAAAGCAGAGAAGTTACTCTCGGATTTAGAATCTGAATATCCGACATTCATAAAGCCAATGCTTCCGTCGCATGTGAGCGGGGGGTTTTGGCTGGGTCTTTCAGTCCAGTTCTGCAAGACTAATCTGCCAAAGCAGGACGAAATGATTACTTTGATAGATGAAGATGGGGATGAGTATCCCACGGTATATTTGGCCCGTAAAAATGGACTTAGCGGTGGATGGAAGGGTTTTGCGGTTGCTCATAACCTAGCTCATGGGGACGCATTAGTGTTTCAGCTAATCAGACCTACGGCATTCAAGGTGTACATTATTAGAGTGAAGAGTCCTACTCCTACAGAGGGCAATTGGCTGTAA 690 0.471 MVATKLSYEESRRKRLEENKKRIEALNLHQLSQALRNSPSPKPSPMKHTKTRSVEKQIVVVRRSGRVANMPAPVYKEVVIDRVAVPRRVYGTRRNLSNRGQASEEAREEALAKAEKLLSDLESEYPTFIKPMLPSHVSGGFWLGLSVQFCKTNLPKQDEMITLIDEDGDEYPTVYLARKNGLSGGWKGFAVAHNLAHGDALVFQLIRPTAFKVYIIRVKSPTPTEGNWL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3968g00046 229 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Pral3968g00046 229 MobiDBLite consensus disorder prediction 31 47 - -
Pral3968g00046 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 219 IPR044837 -
Pral3968g00046 229 Coils Coil 104 124 - -
Pral3968g00046 229 Gene3D - 102 220 IPR015300 -
Pral3968g00046 229 SMART B3_2 128 219 IPR003340 GO:0003677
Pral3968g00046 229 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Pral3968g00046 229 SUPERFAMILY DNA-binding pseudobarrel domain 122 218 IPR015300 -
Pral3968g00046 229 Coils Coil 6 26 - -
Pral3968g00046 229 MobiDBLite consensus disorder prediction 31 53 - -
Pral3968g00046 229 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3968g00046 Pral-Chr3968 229816 232477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3968g00046 55 220 B3 DNA Binding Superfamily AT5G42700 60.241 1.27e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral3968g00046 B3 4.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3968g00046 - - qsa:O6P43_018914 313.538