Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3968g00025 ATGGAAATCATGGAACAGAGTATCCTATGCAAATACACTGTCCACGAAAGTGTCACCAAGAAGTACACCAAGCCGGGTGCGGCCAACAAGGCTGCCGATGTTCACAGTCCCATAGAGCCCAGAGTGGTACGGATATCTGTCACCGATCCAGACGCCACTGACTCCTCCAGCGATGAGGAAGGAGAGTACTGCTTTAGTCGACAGAGAGTGAAGCGTTATGTGAACCAGGTTAACATCGAACCGAGCTGCAGGAGCTCGGTGACTTCCAATCCGCGGAAGAGGCCCGCAGGAGAAAGTCAAGCCTGCCGGCGGCCGGTTAAGGTTTCTTCTACAAATAACGGAAGGAAGTTCCGAGGAGTACGACAAAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCCGCTCGTCGTGTACGCGTGTGGTTGGGCACCTTCGACACTGCAGAGGAAGCGGCTATGGTGTATGACAATGCAGCAATTAAGATACGTGGACCAGACGCGTTGACAAACTTCGTGACCCCGCCGCCGAGGGAGAAGCCGGAAATGAATGTAGTGGTGAAGTCGGAAGCGTCGGGCTCCGGCTACGATTCCGGCGACGAATCACATCGTCTGCCATCTCCCACGTCAGTGCTGCAATTCAGAAGCAATTGCAGCGAAGAGACCGAACCGCAGAAGGCAAGCGAACCTGAAAAAGAGAGTGAGGCCGAGACGGAGACAGCCGAAGTGGAAGGTGTGTTTCGGGAGTGTGAAGGCGAAACGAGTATGCCAGATGAGAAGGTGGACTATTTCGGGTTCGACACGCAGAACGAGGATTACTTCGGGTTCGATATGCCAAATTGGGAGCAGGTGTTCGACTTCTCGACGCCAGAACCGGAATACTCATTAATGTTCGAAGAAAGCCCTCCGTTTCTGGGGGAGACGACGGCGATGTTACCGGAGGAAGATTTCAGAGTGGACGATATGATCGTGGGGGAGGCAGAGTTGGAGTTGGAGTTGGAGAAGTCATTCTCGCCGTCGACGCCGTGCCAAATGGACGATTACTTCCAAGACATACTGTCGGGTTCGGACCCTCTGGTGGTGCTGTGA 1089 0.5418 MEIMEQSILCKYTVHESVTKKYTKPGAANKAADVHSPIEPRVVRISVTDPDATDSSSDEEGEYCFSRQRVKRYVNQVNIEPSCRSSVTSNPRKRPAGESQACRRPVKVSSTNNGRKFRGVRQRPWGKWAAEIRDPARRVRVWLGTFDTAEEAAMVYDNAAIKIRGPDALTNFVTPPPREKPEMNVVVKSEASGSGYDSGDESHRLPSPTSVLQFRSNCSEETEPQKASEPEKESEAETETAEVEGVFRECEGETSMPDEKVDYFGFDTQNEDYFGFDMPNWEQVFDFSTPEPEYSLMFEESPPFLGETTAMLPEEDFRVDDMIVGEAELELELEKSFSPSTPCQMDDYFQDILSGSDPLVVL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3968g00025 362 MobiDBLite consensus disorder prediction 83 120 - -
Pral3968g00025 362 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Pral3968g00025 362 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Pral3968g00025 362 MobiDBLite consensus disorder prediction 222 243 - -
Pral3968g00025 362 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 40 256 - -
Pral3968g00025 362 MobiDBLite consensus disorder prediction 191 243 - -
Pral3968g00025 362 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Pral3968g00025 362 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Pral3968g00025 362 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Pral3968g00025 362 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Pral3968g00025 362 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Pral3968g00025 362 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Pral3968g00025 362 MobiDBLite consensus disorder prediction 203 221 - -
Pral3968g00025 362 CDD AP2 116 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3968g00025 Pral-Chr3968 135490 137475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3968g00025 10 275 AP2-EREBP Transcription Factor Family AT4G27950 44.118 1.02e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3968g00025 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3968g00025 - - pcin:129303306 597.816