Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3968g00021 ATGGACGCCGGCTTCCCTGATATTTTTGAAGACAAGGACTTGGACTTGGGTGGAGACGATCTGCTTGCCATTTTGGACTCCCTCGAAGACTTCACCAATTTTCCTCCCGTCGAAGAATCCCTTACCGTTACCTCAAAAGAGAATAACGACGAAACCACAAGCGCTCTCCAATGTGATTCCCTAACTCAGCTTCAAACTACACCCAGAACCAAGAGACAGAAGCTTTCGGAGCCATCCGAAGAACCTAAGATATCTCATATCGCTGTGGAGCGTAACCGAAGAAAGCAAATGAACGAGCACTTGTCCGTCTTGAGGTCCCTCATGCCTTGCTTCTATGTCAAACGAGGCGATCAAGCATCAATAATAGGAGGAGTGGTGGAGTACATCAACGAGTTGCAGCAACTTCTGCAGTCCCTGGAGGCCAAGAAACAGAGAAAGGTGTACAATGAGGTTCTGAGCCCTAAGCTCGTGTCAAGCCCAAGGCTTTCTCCCAGAGTGATGCCACCGGTGAGCCCTAGGCTAAACCTGCCCATTAGCCCAGGCACACCACAGCCAGGTAGCCCCTATAAGCCCCACCCCAGACTATCCAGCTCTCTGGAGCCATCTCCCACATCTTCTGCTTCTTCCTCCATCAACGACAATATCAACGAGCTCGTCGCAAACTCCAAGTCTCCCATTGCCGACGTCGAGGTTAAGTTCTCGGGGCCCCACGTCCTCTTAAAAACTCTATCTCCTCCAATCCCTGGACAAGCTTTAAAAATCATCTCCGCTCTTGAAGATCTGGCACTCGAAATCCTTCAGGTCACCATCACCGCTACTGAAGAAAGCGTACTTAACTCATTCACCATCAAGATTGGAGTTGAATGCCAGCTCAGTGCCGAGGATCTGGCTCAACAAGTCCAGCAAACTTTCTCGCCTCATGGGCTTCCCTCGTGA 936 0.5043 MDAGFPDIFEDKDLDLGGDDLLAILDSLEDFTNFPPVEESLTVTSKENNDETTSALQCDSLTQLQTTPRTKRQKLSEPSEEPKISHIAVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVEYINELQQLLQSLEAKKQRKVYNEVLSPKLVSSPRLSPRVMPPVSPRLNLPISPGTPQPGSPYKPHPRLSSSLEPSPTSSASSSINDNINELVANSKSPIADVEVKFSGPHVLLKTLSPPIPGQALKIISALEDLALEILQVTITATEESVLNSFTIKIGVECQLSAEDLAQQVQQTFSPHGLPS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3968g00021 311 CDD bHLH_AtFAMA_like 84 155 - -
Pral3968g00021 311 Gene3D - 69 147 IPR036638 GO:0046983
Pral3968g00021 311 Coils Coil 125 149 - -
Pral3968g00021 311 PANTHER TRANSCRIPTION FACTOR FAMA 18 304 IPR044283 GO:0003700|GO:0010052
Pral3968g00021 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 149 IPR036638 GO:0046983
Pral3968g00021 311 MobiDBLite consensus disorder prediction 165 190 - -
Pral3968g00021 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Pral3968g00021 311 MobiDBLite consensus disorder prediction 159 211 - -
Pral3968g00021 311 MobiDBLite consensus disorder prediction 197 211 - -
Pral3968g00021 311 FunFam Transcription factor SPEECHLESS 73 147 - -
Pral3968g00021 311 Pfam Helix-loop-helix DNA-binding domain 83 133 IPR011598 GO:0046983
Pral3968g00021 311 SMART finulus 87 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3968g00021 Pral-Chr3968 105339 106909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3968g00021 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 48.711 1.01e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3968g00021 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3968g00021 K20558 - gmx:100777437 372.859