Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3967g00008 ATGATAATCAAGCGGAACCTGAAAACCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACTCGGCCGGGGACGACGATGATTGCTCTGCTGCTCGGAAGAAGAGGAAGACTAATGGGTATTACCCTTTGAATCTTCTCGGCGATGTCGCCGCCGGTATACTTCCTGTTAGCTTCCATGGTTTACTAGGCGCTGGTGTTTCTGAGAAGGGCTTTTCTGCATCATGGTGCGCGGAAGTCTCGTGCTCCCCTGTTCAGGCGGAGTCAAAGTCCAAGGGTGGGAACTCTGTAACAGCTAAGATTAATCGGCCTGCGGAGGAAGCACGGCCGCCACTGGTCAGAACGTCAAGAGGCCGAGTTCAGGTACTCCCTTCGCGTTTCAACGATTCAGTTATTGAGAATTGGAGGAAAGAGAGCAAGACGAACTCCCGTGATTATAGTTTTGAAGACGAACTTGATAGTAGGAAGGAGAATAGTTTTAGGACACCGAAGTCATACAATCAGAATACCAGAAAAGGGAGAAACGATGATAAAGTTGGCTATAAGTCTCGGAAATATTCGGCATTGTATGAGGAGGAGGAGGATGAAGTAAGAGAGGATGGGCCTGTAAGGTATAGGAATTTTGATACGAGGAAGTATTCAACTTCTAGCACACTCAACCCGAAGCGCGAGCAATTAATTGAAGATGAGAGTCGCGGATTTATGTATATGGACGAAGTTGATATAACAGGTAACGAGAGATTTTTTAAGGAGAATGGCGAGAAAAGGGATGGATTATATGGACCAGAAGACTTTTACGCAGGTGATATAGTGTGGGCCAAGGCTGGGAAGAAGGAGCCCTTTTGGCCAGCCATTGTCATTGATCCAATGTCTCAGGCACCTGAGCTGGTCTTGAGGTCTTGTATAGCTGATGCAGCTTGTGTGATGTTTCTTGGGTACTCTGCAAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATAGATTATGTAGACAGGTTTCAGGGACAGTCGGAATTGAGTTACTATAACCCTTCTGATTTTCAAGTAGCAATAGAGGAGGCATTCTTGGCAGATCGGGGATTTACAGAGAAGTTGATAGCGGATATAAATTTAGCAGCTGGTAACACAGGGTATGATGAAACCTTTCCAAAAGGTATACCGGAGGCCCCTGGTTCAAAGCAGTATGCAGGATGTCACTTTCTGAGCCAGGATTTTTTTGATAAGAGGAAAGATACACGACCCTGTGAAGTTTGTGGTTTGGATCTTCCTTTCAAAACATCAAAGAAAACAAAGGATTCATCTCCTAGTGGCCAATTTTTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGTTGCGATGGATGTAAAGTTTGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGGGGAACTGATTATTACTGCCCAACGTGTAAAGCTAAGTTTGACTTTGAATTATCTGATTCAGAAAAGTCCCAGCCGAAAGTCAAATGGAACAAGAACAACGGGCAGCTAGTGCTACCAAACAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCTAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAGAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATCGAGAAATTGGAGAACAAGTGTTAGGGTGAAAGGCTCTATGCTCCCACTGGAACAATGGATGTTGCAGCTGGCAGAATTTCATGCAAATGCTCAAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTGCGTTTTTGCAAGAGAAGTATGAACCAGTTTATGCTAAGTGGACAACAGAGCGGTGTGCTGTGTGCAGATGGGTAGAAGATTGGGACTATAATAAAATTATTATTTGCAACAGGTGTCAAATAGCTGTTCATCAAGAGTGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCTCACATTAAACGAGAGTGTTGTCTTTGTCCTGTAAAGGGTGGTGCCCTAAAGCCAACCGATGTGGACACACTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCTAATTCTTTTGTGAAGATTTGTGTTATATGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCGTCAAGGGCTGGATATCGCATGGAGTTGCATTGTTTAGAGAAAAATGGTAGGCAGACGACAAAAATGGTTTCTTATTGTGCGTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGAGTTATTTCTACCAAAAGCCTTCTCCAAAATAAGAAAAAGTATGGGTCAAGGTTGATTTCGTCTAATAGAATAAAGCTAGAAGACACTCCTGTAGAGAACATTGAGGATGAACCATTTTCTGCTGCAAGGTGCCGTGTCTTTCAAAGAACAAATCTCAGCAAAAAGAGAGCAGCAGATGAAGCCATTTCCCATCGAGTGAAAGGTCACTGCCATCACCCTTTAGACACAATACAGAGATTGAATGCATACAGGGTAATGGACGAGCCTCCAACATTTTCTTCTTTTAGAGAACGTTTGTACCACTTACAGAGAACCGAAAATGAACGTGTTTGCTTTGGTAGATCGGGTATACACGGATGGGGCCTCTTTGCACACAGAAATATACAAGAAGGGGAAATGGTTCTTGAATATCGTGGGGAACAAGTGAGACGCAGCATTGCTGATCTAAGGGAGGCGCATTATAAGAGAGAAGGCAAAGATTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGCATGCCGAATTGCTATGCAAGAATTATGAGCGTCGGTGATGATGAGAGCCGTATCGTACTCATCGCAAAGACCAATGTTCCCGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTGCCATGTTTATGTAAAGCTCCAAATTGCAGGAAATTCATGAACTAG 3261 0.4299 MIIKRNLKTQMPSLKRCKLGDSAGDDDDCSAARKKRKTNGYYPLNLLGDVAAGILPVSFHGLLGAGVSEKGFSASWCAEVSCSPVQAESKSKGGNSVTAKINRPAEEARPPLVRTSRGRVQVLPSRFNDSVIENWRKESKTNSRDYSFEDELDSRKENSFRTPKSYNQNTRKGRNDDKVGYKSRKYSALYEEEEDEVREDGPVRYRNFDTRKYSTSSTLNPKREQLIEDESRGFMYMDEVDITGNERFFKENGEKRDGLYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYSANENQRDYAWVKHGMIFPFIDYVDRFQGQSELSYYNPSDFQVAIEEAFLADRGFTEKLIADINLAAGNTGYDETFPKGIPEAPGSKQYAGCHFLSQDFFDKRKDTRPCEVCGLDLPFKTSKKTKDSSPSGQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKSRNWRTSVRVKGSMLPLEQWMLQLAEFHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPHIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQNKKKYGSRLISSNRIKLEDTPVENIEDEPFSAARCRVFQRTNLSKKRAADEAISHRVKGHCHHPLDTIQRLNAYRVMDEPPTFSSFRERLYHLQRTENERVCFGRSGIHGWGLFAHRNIQEGEMVLEYRGEQVRRSIADLREAHYKREGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3967g00008 1086 ProSiteProfiles Extended PHD (ePHD) domain profile. 706 821 IPR034732 -
Pral3967g00008 1086 SMART set_7 944 1067 IPR001214 GO:0005515
Pral3967g00008 1086 CDD PWWP_AtATX3-like 266 370 - -
Pral3967g00008 1086 CDD SET_SETD1-like 931 1082 - -
Pral3967g00008 1086 ProSiteProfiles Zinc finger PHD-type profile. 652 703 IPR019787 -
Pral3967g00008 1086 MobiDBLite consensus disorder prediction 143 160 - -
Pral3967g00008 1086 CDD PHD_ATX3_4_5_like 654 700 IPR042011 -
Pral3967g00008 1086 SMART PostSET_3 1070 1086 IPR003616 -
Pral3967g00008 1086 FunFam Histone-lysine N-methyltransferase 704 823 - -
Pral3967g00008 1086 ProSiteProfiles SET domain profile. 944 1061 IPR001214 GO:0005515
Pral3967g00008 1086 SUPERFAMILY FYVE/PHD zinc finger 653 717 IPR011011 -
Pral3967g00008 1086 Pfam PHD-zinc-finger like domain 708 820 - -
Pral3967g00008 1086 CDD ePHD_ATX3_4_5_like 709 820 IPR041955 -
Pral3967g00008 1086 FunFam Histone-lysine N-methyltransferase 918 1086 - -
Pral3967g00008 1086 Pfam PHD-finger 667 701 - -
Pral3967g00008 1086 CDD PHD_TCF19_like 461 511 - -
Pral3967g00008 1086 SUPERFAMILY SET domain 934 1086 IPR046341 -
Pral3967g00008 1086 PANTHER PHD FINGER PROTEINS 66 532 - -
Pral3967g00008 1086 ProSiteProfiles PWWP domain profile. 267 336 IPR000313 -
Pral3967g00008 1086 ProSiteProfiles Zinc finger PHD-type profile. 458 514 IPR019787 -
Pral3967g00008 1086 Pfam SET domain 955 1060 IPR001214 GO:0005515
Pral3967g00008 1086 Gene3D SET domain 839 1086 IPR046341 -
Pral3967g00008 1086 ProSiteProfiles Post-SET domain profile. 1070 1086 IPR003616 -
Pral3967g00008 1086 ProSitePatterns Zinc finger PHD-type signature. 655 700 IPR019786 -
Pral3967g00008 1086 Pfam PHD-finger 460 513 IPR019787 -
Pral3967g00008 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 703 IPR013083 -
Pral3967g00008 1086 MobiDBLite consensus disorder prediction 143 178 - -
Pral3967g00008 1086 SMART PHD_3 654 701 IPR001965 -
Pral3967g00008 1086 SMART PHD_3 460 512 IPR001965 -
Pral3967g00008 1086 SMART PHD_3 765 821 IPR001965 -
Pral3967g00008 1086 SUPERFAMILY FYVE/PHD zinc finger 459 515 IPR011011 -
Pral3967g00008 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 516 IPR013083 -
Pral3967g00008 1086 Gene3D - 262 366 - -
Pral3967g00008 1086 Pfam PWWP domain 268 361 IPR000313 -
Pral3967g00008 1086 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 823 IPR013083 -
Pral3967g00008 1086 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1086 IPR025780 -
Pral3967g00008 1086 MobiDBLite consensus disorder prediction 87 120 - -
Pral3967g00008 1086 SUPERFAMILY Tudor/PWWP/MBT 260 364 - -
Pral3967g00008 1086 FunFam Histone-lysine N-methyltransferase 642 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3967g00008 Pral-Chr3967 77108 87819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3967g00008 655 820 C2H2 Transcription Factor Family AT3G14740 32.948 1.24e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral3967g00008 zf-HC5HC2H_2 2.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3967g00008 - - aprc:113853254 1839.31