LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3966g00002	ATGGACTTGGACAGCATCGAGTGTGTTTCGTCCTCAGATGGCATGGATGAGGATGAGATCCAACACCATAGTCTGCATCCCCACCCCCATCTTCATTCTGAGTTTTCTTCAACCAAGCCTCGCAATGGAGGCACCAATAACAACAATATTATGGGTCCTACGGCCATTGCTCCCGCAACCAGTGTCCACGAATTGTTGGAGTGCCCTGTCTGTACCAATTCAATGTACCCACCAATTCATCAGTGCCACAATGGGCACACACTGTGTTCCACATGCAAAACAAGAGTTCACAATCGATGTCCAACTTGTAGACAAGAACTTGGAGATATTAGGTGTCTAGCACTTGAGAAGGTGGCTGAATCACTTGAGTTACCATGCAAGTATTATTCCCTTGGATGCCCAGAAATCTTTCCTTACTACAGCAAACTCAAGCATGAGGCAGTCTGCAATTTCAGACCATATAATTGCCCTTATGCTGGATCTGAATGCTCTGTTGCTGGGGATATCCCATTCCTTGTTGCTCATTTGAGGGACGATCACAAGGTAGATATGCACACAGGTTGTACTTTCAATCATCGGTACGTGAAATCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACGGTCTTTCATTGTTTTGGCCAGTACTTCTGCCTTCACTTCGAAGCTTTTCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAAGCTCGAAACTACAGTTATAGCCTAGAGGTTGGGGCAAACGGTAGGAAACTTATATGGGAAGGTACTCCCCGAAGTATCCGGGATAGCCACCGGAAAGTTAGGGATAGCCATGATGGCCTTATTATCCAGCGAAACATGGCCTTATTTTTCTCTGGTGGGGATAGGAAGGAACTCAAGCTTAGAGTTACAGGAAGAATTTGGAAGGAACAACAGAATCCTGATGCTGGCGTGTGCATACCAAATCTTTGTAGCTGA	993	0.4572	MDLDSIECVSSSDGMDEDEIQHHSLHPHPHLHSEFSSTKPRNGGTNNNNIMGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAVCNFRPYNCPYAGSECSVAGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3966g00002	330	Gene3D	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	175	309	IPR008974	GO:0005515
	Pral3966g00002	330	ProSiteProfiles	Zinc finger RING-type profile.	68	104	IPR001841	-
	Pral3966g00002	330	MobiDBLite	consensus disorder prediction	15	35	-	-
	Pral3966g00002	330	MobiDBLite	consensus disorder prediction	36	54	-	-
	Pral3966g00002	330	MobiDBLite	consensus disorder prediction	1	54	-	-
	Pral3966g00002	330	SUPERFAMILY	RING/U-box	60	108	-	-
	Pral3966g00002	330	PANTHER	E3 UBIQUITIN PROTEIN LIGASE SIAH	47	315	-	-
	Pral3966g00002	330	SUPERFAMILY	TRAF domain-like	121	313	-	-
	Pral3966g00002	330	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	121	174	IPR013083	-
	Pral3966g00002	330	FunFam	E3 ubiquitin-protein ligase SINAT3	11	119	-	-
	Pral3966g00002	330	FunFam	E3 ubiquitin-protein ligase SINAT3	120	176	-	-
	Pral3966g00002	330	CDD	RING-HC_SIAHs	66	104	-	-
	Pral3966g00002	330	ProSiteProfiles	Zinc finger SIAH-type profile.	121	181	IPR013010	GO:0008270
	Pral3966g00002	330	CDD	Sina	182	310	-	-
	Pral3966g00002	330	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	37	120	IPR013083	-
	Pral3966g00002	330	FunFam	E3 ubiquitin-protein ligase SINAT5-like	177	309	-	-
	Pral3966g00002	330	Pfam	Seven in absentia protein family	110	309	IPR018121	GO:0005737\|GO:0006511\|GO:0007275

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3966g00002	Pral-Chr3966	14133	17697	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3966g00002	59	316	C3H Transcription Factor Family	AT2G41980	81.395	1.08e-162	454

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3966g00002	K04506		-	qsa:O6P43_015002	675.626