Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3966g00001 CCAGAATTGGGCCCCAAAACATACATTGCATATGGATCTTTGGAAGAGCTCGGTAGAGGTGATTCTGTAGCAAAACTACATTGTGACGTATCAGATGCGGTCAATATATTGACACATACAGCTGAAGTAAAAAGACCACCACAGCAAAGAAAAGCCATAATCAAATTACAGAAAAAGCATGAAGCTGAAGATATGTGTGCACTCTATGACAGGAAGAATGAAGGATTGACTTCTTGTAGGAAAAAGCCAAAACGGCGCTGCCTGGATACGAACAAGGGTTCTAAAAGCCCTAGAAAAGAAGACACTATCGTGGGAGACTATACTGTACTTAAAAGCCAGGTATCAGAGGAAGAGAATATGAATGAACAGCGGAATGGTTCTGGAGATTTGGGACCCTCAAGAGCATATACTGCAGCTTGCGCTCTAAAACGTGCAGCTTCTCCCAAACTTGAAAAAGAAGACTCTGAACGGACGCATGGTGAAGTTAAGAATGCTGTCCAAAAAAGCTCGTTATCACATGATGGACATCATGAAGGAATTTCATCCCCTGACCATATTCTGTCTGGAACATCCACAAAAGACAGTCATGAAAAAGAAAAAACTTATGCCTGGGTAAATCAGGTCAATTCAACAAATTTTACAGAACAATCTGAATCAAAAGGCACGTGCATGTGTGCTGAGGAGTCTCCTAATGGAATCATTCCCAACGTTGAGCATGATTGTGACAGTTCCTGTGCTGAGGGGACTAACACGGGTCGTGACTCCATGCTGCACAAGTCTTGTGAACAAGGGGCATGTTCTGAAATCAAGAATCACAAAATTGAGTCACTTAGAAATGATACGAGAACAGCAAAAGCTTTCCTTGAAAATGATGATGCGTTAGAGACCCAATACGGGAGTGCTGTATGGGACATATTTCGCAGGCAAGATGTGCCGGTGCTGATGGAGTACCTGAAAAAACACTACAGAGAATTCCGCCACATAAATAATCTTCCTGTGAATTCTATAATACATCCAATTCATGACCAGACTCTTTATCTAAACGAAAGACATAAAAAGCAGCTAAAGGAAGAATTTGGCATTGAACCATGGACATTTGAGCAACACCTTGGCGAGGCTGTTTTCATACCTGCAGGGTGCCCGCATCAAGTGAGGAATAGACAGTCTTGCATAAAAGTGGCTCTAGACTTTGTTTCACCTGAAAATGTTCAAGAGTGTGTTCGATTGACGGAGGAATTTCGGCTGCTTCCGAAGAAACATAGATCGAAGGAAGATATACTGGAGATAAAGAAGATGGCACTGTATGCTGCCAACGCTGCTATAACTGAAGCCATGAGATTAATGCGGAGGATATGA 1356 0.4226 PELGPKTYIAYGSLEELGRGDSVAKLHCDVSDAVNILTHTAEVKRPPQQRKAIIKLQKKHEAEDMCALYDRKNEGLTSCRKKPKRRCLDTNKGSKSPRKEDTIVGDYTVLKSQVSEEENMNEQRNGSGDLGPSRAYTAACALKRAASPKLEKEDSERTHGEVKNAVQKSSLSHDGHHEGISSPDHILSGTSTKDSHEKEKTYAWVNQVNSTNFTEQSESKGTCMCAEESPNGIIPNVEHDCDSSCAEGTNTGRDSMLHKSCEQGACSEIKNHKIESLRNDTRTAKAFLENDDALETQYGSAVWDIFRRQDVPVLMEYLKKHYREFRHINNLPVNSIIHPIHDQTLYLNERHKKQLKEEFGIEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVQECVRLTEEFRLLPKKHRSKEDILEIKKMALYAANAAITEAMRLMRRI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3966g00001 451 ProSiteProfiles JmjC domain profile. 1 414 IPR003347 -
Pral3966g00001 451 MobiDBLite consensus disorder prediction 113 130 - -
Pral3966g00001 451 SUPERFAMILY Clavaminate synthase-like 17 434 - -
Pral3966g00001 451 MobiDBLite consensus disorder prediction 145 195 - -
Pral3966g00001 451 Gene3D Cupin 1 128 - -
Pral3966g00001 451 Gene3D Cupin 246 423 - -
Pral3966g00001 451 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 447 IPR045109 GO:0032454|GO:0033169
Pral3966g00001 451 FunFam Transcription factor jumonji (JmjC) domain-containing protein 234 423 - -
Pral3966g00001 451 MobiDBLite consensus disorder prediction 146 163 - -
Pral3966g00001 451 MobiDBLite consensus disorder prediction 113 133 - -
Pral3966g00001 451 SMART cupin_9 1 414 IPR003347 -
Pral3966g00001 451 Pfam JmjC domain, hydroxylase 298 397 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3966g00001 Pral-Chr3966 65 3292 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral3966g00001 JmjC 5e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3966g00001 K15601 - gmx:100800662 458.373