Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3965g00061 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGATTGGTTAAACCTATGGAATTAGGTTCAAATCCAAAGCCTCCTATGTTGGAGAAAAAGGCAAGGCCTCAGAAAGATCAAGCCTTGAACTGTCCACGGTGCAATTCAACCAACACCAAATTCTGCTACTACAACAACTATAGCCTCTCTCAGCCCAGATACTTCTGTAAGACTTGCAGAAGGTATTGGACTGAAGGTGGCTCTCTCAGGAATGTTCCTGTGGGTGGAGGTTCCAGAAAAAACAAGAGACCTTCTTCTTCTTCATCTTCTTCAGCAGCACCAAAGAAGCTTCCAGAACCTTCTCCTCCGAACCCCACCAGCAACAAGATCCATCAAGCCCAGGATCTTAACCTGGCATACCCAACACCCCCATCACTCCCTCCACAACCTGAGATTTCCGGCAGCTCAAATTCTTCGAGGGGTTTGATGAATTCCTTGATGCCCATGTCGGTTTCATCAGATGGAGGCATGATGTATAACAGTAATAGTAATTCAGCCCATCATGGGTTTCCTTTGGAGTTCAAGCCTCATCATCAAGGGCTTAATTTTAGCTTTGAGGGGTTTGAGAATAATGGGTTTGGAAGTGGTCTTCATCAGGGAATGCAATTGGGTAATTCTGCTGGTGGCGCAAGGATCTTGTTTCCTATTGAAGATTTGAAGCACGTGCCAAGCACCACCCCTAGTCATGAGTTTGATCAGCAAAATACTAGAGGAAGCCATGGAGATCCGAGTGGGTTTTGGAATGGCATGTTAGGTGGAGGAGCATGGTAG 804 0.4639 MDTAQWAQGNIGLVKPMELGSNPKPPMLEKKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPSSSSSSSAAPKKLPEPSPPNPTSNKIHQAQDLNLAYPTPPSLPPQPEISGSSNSSRGLMNSLMPMSVSSDGGMMYNSNSNSAHHGFPLEFKPHHQGLNFSFEGFENNGFGSGLHQGMQLGNSAGGARILFPIEDLKHVPSTTPSHEFDQQNTRGSHGDPSGFWNGMLGGGAW 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3965g00061 267 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Pral3965g00061 267 MobiDBLite consensus disorder prediction 236 267 - -
Pral3965g00061 267 Pfam Dof domain, zinc finger 37 94 IPR003851 GO:0003677|GO:0006355
Pral3965g00061 267 MobiDBLite consensus disorder prediction 91 106 - -
Pral3965g00061 267 MobiDBLite consensus disorder prediction 142 157 - -
Pral3965g00061 267 MobiDBLite consensus disorder prediction 1 38 - -
Pral3965g00061 267 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 190 IPR045174 GO:0003700|GO:0006355
Pral3965g00061 267 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Pral3965g00061 267 MobiDBLite consensus disorder prediction 78 157 - -
Pral3965g00061 267 MobiDBLite consensus disorder prediction 237 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3965g00061 Pral-Chr3965 327607 329680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3965g00061 27 267 C2C2-Dof Transcription Factor Family AT3G61850 40.071 1.89e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral3965g00061 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3965g00061 - - pcin:129300981 455.292